View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3358_low_4 (Length: 247)
Name: NF3358_low_4
Description: NF3358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3358_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 36330156 - 36330395
Alignment:
| Q |
1 |
agcacccaagtatgttaaaccctaatgagttaacttcataaatcaatgttgtcaaactcaattgtaaacaagatcattaccttgttaagtctagaaccat |
100 |
Q |
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| T |
36330156 |
agcacccaagtatgttaaaccctaatgagttaacttcacaaatcaatgttgtcaaactcaattgtaaacaacatcattaccttgttaagtctagaaccat |
36330255 |
T |
|
| Q |
101 |
catttctatgaggttccagtactagtgcagctacttctctctcaaatttagatcttggtctaaattcagaagctatagctcctatagttgaaaaccctat |
200 |
Q |
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||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36330256 |
catctctatgagcttccagtactagtgcagctacttctctctcaaatttagatcttggtctaaattcagaagctatagctcctatagttgaaaaccctat |
36330355 |
T |
|
| Q |
201 |
atctactttttcataaaaggatatagtcgttgcatctctg |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
36330356 |
atctactttttcataaaaggatatagtcgttgcatctctg |
36330395 |
T |
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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 121 - 204
Target Start/End: Original strand, 44369379 - 44369462
Alignment:
| Q |
121 |
actagtgcagctacttctctctcaaatttagatcttggtctaaattcagaagctatagctcctatagttgaaaaccctatatct |
204 |
Q |
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| T |
44369379 |
actagtgcagccattttcctctcaaattcagttctgggttcaaattcagaagctattgctcctatagttgaaaaccctagatct |
44369462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 161 - 219
Target Start/End: Original strand, 52929484 - 52929542
Alignment:
| Q |
161 |
taaattcagaagctatagctcctatagttgaaaaccctatatctactttttcataaaag |
219 |
Q |
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| T |
52929484 |
taaattcagaagctatagctcctatagttgaaaaccctagatctatcttttcatcaaag |
52929542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 121 - 204
Target Start/End: Complemental strand, 20238098 - 20238015
Alignment:
| Q |
121 |
actagtgcagctacttctctctcaaatttagatcttggtctaaattcagaagctatagctcctatagttgaaaaccctatatct |
204 |
Q |
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||||||||||| | || |||||||||| || ||| ||| ||||||||||||||| |||||||||||||||||||||| |||| |
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| T |
20238098 |
actagtgcagccattttcctctcaaattcagttctgggttcaaattcagaagctattgctcctatagttgaaaaccctagatct |
20238015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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