View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3359_low_1 (Length: 1108)
Name: NF3359_low_1
Description: NF3359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3359_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 618; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 618; E-Value: 0
Query Start/End: Original strand, 42 - 1094
Target Start/End: Original strand, 28789262 - 28790311
Alignment:
| Q |
42 |
acaatggaggcggattggttggtctcctccacccctaaatgtcgttaaggtcaatatggagggatcatctgttctaatcgaagtttcattcaaggatatt |
141 |
Q |
| |
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||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||| || |
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| T |
28789262 |
acaatggaggcggattggttggtctcctcgacccccaaatgttgttaaggtcaatatggatggatcatctgttctaatggaagtttcattcaaggatttt |
28789361 |
T |
|
| Q |
142 |
tctgcaacctgggagcttgtactgctttcattgccaagcttcgtgctctc-ttat-ggtagtaagtgtgctggagagcttaatcttcatgcagttatttt |
239 |
Q |
| |
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|||||||||| ||||| |||| ||| || | || ||||||||||||| |||| ||||||||||||| | |||||||||| || | |||| ||||| |
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| T |
28789362 |
tctgcaacctaggagcatgtatggctctctattccgtgcttcgtgctctccttattggtagtaagtgtggccgtgagcttaatcctcgtacagtaatttt |
28789461 |
T |
|
| Q |
240 |
t-gtactgattcagcggtggttgctcttggatggtttagtccaaaacgacttcctccttactttttaaatttttccttgacgagatccatgccttactca |
338 |
Q |
| |
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| | ||||||||||||||||| ||| ||||||| ||| || ||||||||||||||||||||||| | |||||||| |||||||||||||||||| |
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| T |
28789462 |
tagaactgattcagcggtggtccctca--gatggttcgacccagaatgacttcctccttactttttaaatctctccttgacaagatccatgccttactca |
28789559 |
T |
|
| Q |
339 |
actcttcagcttggcctttctctttccatcatatctatcgtgaagtgaatgctggcttcgtcattgaggcttcaagttctagttttcattatttaagcat |
438 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||| ||| || |||||||||||||||| ||| ||||||||||||||||||||||||||| |
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| T |
28789560 |
actcttcagcttggcctttctctatccatcatatctatcgtgaaatgattgttggcttcgtcattgagactttaagttctagttttcattatttaagcat |
28789659 |
T |
|
| Q |
439 |
tttaattcagaatgattatagcagcattagttatccgcgtattatttcttagttgattagccttctcatcaagagaaaattagggtcagcatattgatat |
538 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||| || |
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| T |
28789660 |
tttaattcagaatgattatagcagcattagttatctgcgtattatttcttagttgattagccttctcatctaaagaagattagggtcagcatattgacat |
28789759 |
T |
|
| Q |
539 |
tcttttttgttagttattatcattatctcacagacacactctctctatcaagttgaagaagcaacttttcagcnnnnnnnnnngttgaggaagcaactca |
638 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||| || |
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| T |
28789760 |
tcttttttgttagttattttcattatctcacagacacactctccttatcaagttgaagaagcaacttttcggcaaaaaaaaa-gttgaggaagcaaacca |
28789858 |
T |
|
| Q |
639 |
actttgttggcaaaagatcttcatgcttgtattttttataaaccggtttcaaagatgtaactgtttgaaagcctctcaatcatgaaacagataaacataa |
738 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |
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| T |
28789859 |
actttgttggcaaaagatcttcatgcttgtatttttcataaaccggtttcaaagatgtaactgttagaaagcctctcaatcatgaaactgataaacataa |
28789958 |
T |
|
| Q |
739 |
gttgcattcatgcaactgagaaagacatacctagacttgaaaatatttttgatatgaaggattatggtcatccttaaatgatattttaaaaaatgtaaac |
838 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||| ||||||| | | ||||||| ||||| ||| |||||| ||||| |||||| ||||||||||| |
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|
| T |
28789959 |
gctgcattcatgcaactgagaaagacatacctagactttaaaatatctgtaatatgaaagattacggtaatcctt-aatgacattttagaaaatgtaaac |
28790057 |
T |
|
| Q |
839 |
caatccatattttgtacaactcaatttcaatattgaacagcgacaacattaaaagcatgggactaaagaaacaatattcaggcaatagtacataaatact |
938 |
Q |
| |
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||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
28790058 |
caatcgatattttgtacaactcaattttaatattgaacaacgacaacattaaaagcatgggactaaagaaacaatattcaagcaatagtacataaatact |
28790157 |
T |
|
| Q |
939 |
aacacatgatgtgcttgcatcaatgatgtttgaaatcaaacaggnnnnnnnntgtgatcatccataaacaattctcaccgaaacaagttttgattaattt |
1038 |
Q |
| |
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||| |||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||| |
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| T |
28790158 |
aactcatgatgtgcttgcatcactgacagttgaaatcaaacag--aaaaaaatgtgatcatccataaacaattctcaccaaaacaagtttttattaattt |
28790255 |
T |
|
| Q |
1039 |
tactgaaatggcttttgaaaacactctaaaaactaaaactaataagcaaactaagt |
1094 |
Q |
| |
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|||||||||||||||||||| || || |||||||||||||||||||| |||||||| |
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|
| T |
28790256 |
tactgaaatggcttttgaaaccagtccaaaaactaaaactaataagcgaactaagt |
28790311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 279; E-Value: 1e-155
Query Start/End: Original strand, 37 - 391
Target Start/End: Original strand, 28782273 - 28782626
Alignment:
| Q |
37 |
cagagacaatggaggcggattggttggtctcctccacccctaaatgtcgttaaggtcaatatggagggatcatctgttctaatcgaagtttcattcaagg |
136 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28782273 |
cagagacaatggaggcggattggttggtctcctccacccctacatgttgttaaggtcaatatggagggatcatctgttctaatcgaagtttcattcaagg |
28782372 |
T |
|
| Q |
137 |
atatttctgcaacctgggagcttgtactgctttcattgccaagcttcgtgctctcttatggtagtaagtgtgctggagagcttaatcttcatgcagttat |
236 |
Q |
| |
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| T |
28782373 |
atatttctgcaacctgggagcttgtactgctttcaatgccgagcttcgtgctctcttatggtagtaagtgtgctggagagcttaatcttcctgccgttat |
28782472 |
T |
|
| Q |
237 |
ttttgtactgattcagcggtggttgctcttggatggtttagtccaaaacgacttcctccttactttttaaatttttccttgacgagatccatgccttact |
336 |
Q |
| |
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|||||| ||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||| | ||||||||||| |
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| T |
28782473 |
ttttgt-ctgattcagcgatggttgctcttggatggttcagtccaaaacgacatcctccttactttttaaatttctccttgacgagtttcatgccttact |
28782571 |
T |
|
| Q |
337 |
caactcttcagcttggcctttctctttccatcatatctatcgtgaagtgaatgct |
391 |
Q |
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|||||||||||||||| ||||||| ||||||||||||| ||||||| ||||||| |
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| T |
28782572 |
caactcttcagcttgggatttctctatccatcatatctaacgtgaagcgaatgct |
28782626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 829 - 892
Target Start/End: Original strand, 28780707 - 28780770
Alignment:
| Q |
829 |
aaatgtaaaccaatccatattttgtacaactcaatttcaatattgaacagcgacaacattaaaa |
892 |
Q |
| |
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||||| |||| | ||||||||||||| ||||||| |||||||||||||| ||||||| ||||| |
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| T |
28780707 |
aaatgcaaacaagtccatattttgtagaactcaacatcaatattgaacagagacaacactaaaa |
28780770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 412 - 474
Target Start/End: Original strand, 28782682 - 28782742
Alignment:
| Q |
412 |
aagttctagttttcattatttaagcattttaattcagaatgattatagcagcattagttatcc |
474 |
Q |
| |
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|||||||||||||| ||||| ||||||||||| || ||||||||||| ||||||||||||| |
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| T |
28782682 |
aagttctagttttccttattcaagcattttaactc--aatgattataggggcattagttatcc |
28782742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 37
Target Start/End: Original strand, 42445079 - 42445114
Alignment:
| Q |
2 |
gtcgagtgagatgaacccgcaccacatttgataacc |
37 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||| |
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| T |
42445079 |
gtcgagagagatgaacccgcaccacatttgataacc |
42445114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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