View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3359_low_2 (Length: 587)

Name: NF3359_low_2
Description: NF3359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3359_low_2
NF3359_low_2
[»] chr5 (4 HSPs)
chr5 (211-577)||(9052880-9053243)
chr5 (467-517)||(37512601-37512651)
chr5 (473-517)||(27173761-27173805)
chr5 (473-517)||(42629944-42629988)
[»] chr1 (4 HSPs)
chr1 (1-217)||(3744091-3744307)
chr1 (13-72)||(3744217-3744278)
chr1 (472-517)||(22535506-22535551)
chr1 (473-517)||(361580-361624)
[»] scaffold0054 (1 HSPs)
scaffold0054 (473-520)||(40140-40187)
[»] chr6 (3 HSPs)
chr6 (470-521)||(32745203-32745254)
chr6 (473-517)||(25319622-25319666)
chr6 (473-517)||(26149315-26149359)
[»] chr3 (1 HSPs)
chr3 (5-48)||(20196243-20196286)


Alignment Details
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 211 - 577
Target Start/End: Complemental strand, 9053243 - 9052880
Alignment:
Q  211 ttgaaatgtcaaaaatagttttaccagaggtccatgagatgaaggcaatgaggccatttaaccccaccatgtataacgacttagaatatacatcatcgcc 310  Q
    |||||||||||||| ||||| |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||   |||    
T  9053243 ttgaaatgtcaaaagtagttgtaccagaggtccatgagatgaaggcaatggagccatttaaccccaccatgtataacgacttagaatatacatc---gcc 9053147  T
Q  311 taagggtacaagtgttgtaaacaacacctcatttctcaagtcaaatgattccacctctactccatcatactttttaccatattgccaccaatgacacatt 410  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9053146 taagggtacaagtgttgtaaagaacacctcatttctcaagtcaaatgattccacctctactccatcatactttttaccatattgccaccaatgacacatt 9053047  T
Q  411 tcattcgtgtatagtcgtacaccagcgatgttagaaaagcatgaacaagcagagtaattaacatcaagttttctccaagtgttacttttaaggctatata 510  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  9053046 tcattcgtgtatagtcgtacaccagcgatgttagaaaaacatgaacaagcagagtcattaacatcaagttttctccaagtgttacttttaaggctatata 9052947  T
Q  511 tctcccataagtattcataagataaatctttccatggtgcatcactccatgaaataccaagttcttc 577  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  9052946 tctcccataagtattcataagataaatctttccatggcgcatcactccatgaaataccaagttcttc 9052880  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 467 - 517
Target Start/End: Complemental strand, 37512651 - 37512601
Alignment:
Q  467 attaacatcaagttttctccaagtgttacttttaaggctatatatctccca 517  Q
    ||||||||||||||||||||||| ||| ||| | ||||||||||| |||||    
T  37512651 attaacatcaagttttctccaagagttgcttcttaggctatatatatccca 37512601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 473 - 517
Target Start/End: Original strand, 27173761 - 27173805
Alignment:
Q  473 atcaagttttctccaagtgttacttttaaggctatatatctccca 517  Q
    ||||||||| ||||||| ||||||||| ||||| |||||||||||    
T  27173761 atcaagtttcctccaagagttactttttaggctgtatatctccca 27173805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 473 - 517
Target Start/End: Original strand, 42629944 - 42629988
Alignment:
Q  473 atcaagttttctccaagtgttacttttaaggctatatatctccca 517  Q
    ||||||||||||||||| ||| |||||||| | ||||||||||||    
T  42629944 atcaagttttctccaagagttgcttttaagacaatatatctccca 42629988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 201; Significance: 1e-109; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 3744091 - 3744307
Alignment:
Q  1 tatggaacagagaagctttgcacaagagaaagcatatggcatagatagaaacagtgacacatcattcgggataaaacgctatgtttagcattattgaaac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3744091 tatggaacagagaagctttgcacaagagaaagcatatggcatagattgaaacagtgacacatcattcgggataaaacgctatgtttagcattattgaaac 3744190  T
Q  101 atagcaaaaacgttttatcccgtagcatcccaaatgatgtatcactgtccctatatctatgtcatgtgctttctcttgtgcaaagcttagtcttcaaact 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  3744191 atagcaaaaacgttttatcccgtagcatcccaaatgatgtatcactgttcctatatctatgccatgtgctttctcttgtgtaaagcttagtcttcaaact 3744290  T
Q  201 cagtaaaattttgaaat 217  Q
    |||||||||||||||||    
T  3744291 cagtaaaattttgaaat 3744307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 13 - 72
Target Start/End: Complemental strand, 3744278 - 3744217
Alignment:
Q  13 aagctttgcacaagagaaagcatatggcatag--atagaaacagtgacacatcattcgggat 72  Q
    ||||||| |||||||||||||| |||||||||  |||| |||||||| |||||||| |||||    
T  3744278 aagctttacacaagagaaagcacatggcatagatataggaacagtgatacatcatttgggat 3744217  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 517
Target Start/End: Original strand, 22535506 - 22535551
Alignment:
Q  472 catcaagttttctccaagtgttacttttaaggctatatatctccca 517  Q
    |||||||||| ||||||| ||||||| ||||||| |||||||||||    
T  22535506 catcaagtttcctccaagagttacttctaaggctgtatatctccca 22535551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 473 - 517
Target Start/End: Complemental strand, 361624 - 361580
Alignment:
Q  473 atcaagttttctccaagtgttacttttaaggctatatatctccca 517  Q
    |||||||||||||||    ||||||||||||||||||||||||||    
T  361624 atcaagttttctccagaaattacttttaaggctatatatctccca 361580  T

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Target: scaffold0054 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 473 - 520
Target Start/End: Original strand, 40140 - 40187
Alignment:
Q  473 atcaagttttctccaagtgttacttttaaggctatatatctcccataa 520  Q
    ||||||||||||||| | ||||||| | ||||||||||||||||||||    
T  40140 atcaagttttctccacgagttacttcttaggctatatatctcccataa 40187  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 470 - 521
Target Start/End: Original strand, 32745203 - 32745254
Alignment:
Q  470 aacatcaagttttctccaagtgttacttttaaggctatatatctcccataag 521  Q
    |||||||||||| ||||| | ||||||| | |||||||||||||||||||||    
T  32745203 aacatcaagtttcctccaggagttacttcttaggctatatatctcccataag 32745254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 473 - 517
Target Start/End: Original strand, 25319622 - 25319666
Alignment:
Q  473 atcaagttttctccaagtgttacttttaaggctatatatctccca 517  Q
    ||||||||||||||| | ||||||| | |||||||||||||||||    
T  25319622 atcaagttttctccatgagttacttcttaggctatatatctccca 25319666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 473 - 517
Target Start/End: Original strand, 26149315 - 26149359
Alignment:
Q  473 atcaagttttctccaagtgttacttttaaggctatatatctccca 517  Q
    ||||||||||||||| | ||||||| | |||||||||||||||||    
T  26149315 atcaagttttctccatgagttacttcttaggctatatatctccca 26149359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 48
Target Start/End: Original strand, 20196243 - 20196286
Alignment:
Q  5 gaacagagaagctttgcacaagagaaagcatatggcatagatag 48  Q
    ||||| ||||| ||||||||||||||||||| ||||||||||||    
T  20196243 gaacaaagaagttttgcacaagagaaagcatgtggcatagatag 20196286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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