View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3359_low_5 (Length: 293)
Name: NF3359_low_5
Description: NF3359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3359_low_5 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 11 - 293
Target Start/End: Complemental strand, 40690156 - 40689874
Alignment:
| Q |
11 |
gaagcaaaggcaaacttagattctctatgatcatcttcaggtgcaggaaggttgagatccaaatccaaagacaaaacattccttttctttctaggatgat |
110 |
Q |
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| T |
40690156 |
gaagcaaaggcaaacttagattctctatgatcatcttcaggtgcaggaaggttgagatccaaatccaaagacaaaacattccttttctttctaggatgat |
40690057 |
T |
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| Q |
111 |
cttcatcaggttccaaagccattggtgtcaaagagagtgtagtgttggctgcagatgttcccaccggcgcgcggtgacgcctcatatggccacctagtgc |
210 |
Q |
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| T |
40690056 |
cttcatcaggttccaaagccattgttgtcaaagagagtgtggtgttggctgcagaagttcccaccggtgcacggtggcgcctcatatggccacctagtgc |
40689957 |
T |
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| Q |
211 |
ttgaccagatgtgaattcagaaccacaaatggaacactcatgaaccttagacttgttgttattgttgcttccaccatgtagat |
293 |
Q |
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| T |
40689956 |
ttgaccagatgtgaattcagaaccacaaatggaacactcatgaaccttagacttgttgttattgttgcttccaccatgtagat |
40689874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 192 - 268
Target Start/End: Complemental strand, 34710589 - 34710513
Alignment:
| Q |
192 |
tcatatggccacctagtgcttgaccagatgtgaattcagaaccacaaatggaacactcatgaaccttagacttgttg |
268 |
Q |
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| T |
34710589 |
tcatatggccaccaagtgcctggccagatgtgaatttagaaccacaaatggagcacccataaaccttggatttgttg |
34710513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 192 - 258
Target Start/End: Complemental strand, 34714285 - 34714219
Alignment:
| Q |
192 |
tcatatggccacctagtgcttgaccagatgtgaattcagaaccacaaatggaacactcatgaacctt |
258 |
Q |
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| T |
34714285 |
tcatatggccaccaagtgcctggccagatgtgaatttagaaccacaaatggagcacccataaacctt |
34714219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 105
Target Start/End: Complemental strand, 34714448 - 34714363
Alignment:
| Q |
17 |
aaggcaaacttagattctctatgatcatcttcaggtgcaggaaggttgagatccaaatccaaagacaaaacattccttttctttctagg |
105 |
Q |
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| T |
34714448 |
aaggcaaacttgaactctctttgatcttcttaagctgcaggaaggttgagatccaaatccaaag---agacattcattttctttctagg |
34714363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 80
Target Start/End: Complemental strand, 34710740 - 34710689
Alignment:
| Q |
29 |
gattctctatgatcatcttcaggtgcaggaaggttgagatccaaatccaaag |
80 |
Q |
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| T |
34710740 |
gattctctttgatcttcttaagctgcaggaaggttgagatccaaatccaaag |
34710689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 267
Target Start/End: Original strand, 20925729 - 20925806
Alignment:
| Q |
190 |
cctcatatggccacctagtgcttgaccagatgtgaattcagaaccacaaatggaacactcatgaaccttagacttgtt |
267 |
Q |
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| T |
20925729 |
cctcatgtgtccacccaatgcttgtccggatgtgaactctgaaccacaaatggaacactcatgaatcttggccttgtt |
20925806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 259
Target Start/End: Complemental strand, 35506246 - 35506177
Alignment:
| Q |
190 |
cctcatatggccacctagtgcttgaccagatgtgaattcagaaccacaaatggaacactcatgaacctta |
259 |
Q |
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| T |
35506246 |
cctcatgtgaccacccaatgcttgacctgatgtgaattcagctccacatattgaacacccatgaacctta |
35506177 |
T |
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