View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3360_high_3 (Length: 360)

Name: NF3360_high_3
Description: NF3360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3360_high_3
NF3360_high_3
[»] chr1 (7 HSPs)
chr1 (81-340)||(3374367-3374626)
chr1 (83-172)||(39332588-39332677)
chr1 (222-335)||(29061161-29061274)
chr1 (81-128)||(19393908-19393955)
chr1 (81-200)||(41034786-41034905)
chr1 (262-335)||(39332403-39332476)
chr1 (81-145)||(17114466-17114529)
[»] chr7 (3 HSPs)
chr7 (81-188)||(33191518-33191626)
chr7 (84-130)||(7543850-7543896)
chr7 (81-143)||(19407635-19407697)
[»] chr3 (7 HSPs)
chr3 (81-221)||(18028331-18028471)
chr3 (81-145)||(26796582-26796645)
chr3 (84-207)||(29347051-29347174)
chr3 (222-293)||(31163028-31163098)
chr3 (84-130)||(51525161-51525207)
chr3 (81-130)||(3367243-3367292)
chr3 (81-130)||(21844701-21844750)
[»] chr8 (9 HSPs)
chr8 (81-133)||(3072281-3072333)
chr8 (81-133)||(8831017-8831069)
chr8 (81-200)||(27786554-27786673)
chr8 (81-210)||(399511-399640)
chr8 (222-307)||(3322107-3322192)
chr8 (81-127)||(14295245-14295291)
chr8 (81-130)||(28225452-28225501)
chr8 (81-130)||(29369406-29369455)
chr8 (83-127)||(36206249-36206293)
[»] chr5 (4 HSPs)
chr5 (83-149)||(15188252-15188318)
chr5 (81-207)||(32278451-32278576)
chr5 (81-197)||(36868529-36868645)
chr5 (81-130)||(788022-788071)
[»] scaffold0531 (1 HSPs)
scaffold0531 (81-221)||(10471-10611)
[»] chr2 (4 HSPs)
chr2 (81-130)||(18811481-18811530)
chr2 (81-221)||(13502796-13502936)
chr2 (116-214)||(18693348-18693446)
chr2 (270-331)||(14296244-14296305)
[»] chr6 (3 HSPs)
chr6 (89-217)||(4263118-4263244)
chr6 (81-207)||(3949589-3949714)
chr6 (275-334)||(25167913-25167972)
[»] chr4 (6 HSPs)
chr4 (81-206)||(18522040-18522164)
chr4 (81-130)||(19852788-19852836)
chr4 (81-206)||(37050256-37050380)
chr4 (89-132)||(22813852-22813895)
chr4 (81-130)||(16593537-16593585)
chr4 (225-330)||(16832081-16832186)


Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 81 - 340
Target Start/End: Complemental strand, 3374626 - 3374367
Alignment:
Q  81 atcaaagcactaaaatataaaagacataagatgcctgaaccaatacaacaaagccacatagtggagaactaaggaaaagaaaaacctgatctctccctaa 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||    
T  3374626 atcaaagcactaaaatataaaagacataagatgcctgaaccaatacaacaaaggcacatagtggagaactaaggaaaagaaaaaccagatctctccctaa 3374527  T
Q  181 aaaggaaaagtcctaaggaaggaggtggcttagtccaccattaccctctctatgaaagttggaacaaaatgattgatattactagctaatctaatgcaat 280  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  3374526 aaaggaaaagtcctaaggaaggaggtggcttagtccaccattaccctctctatgaaagttggaagaaaatgattgatattactagctaatctaatgcaat 3374427  T
Q  281 taaaccaactattctgtagcttccaaggcagctatggagctacccttttgggcacatgtc 340  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  3374426 taaaccaactattctgtagcttccaaggcagctttggagctacccttttgggcacatgtc 3374367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 83 - 172
Target Start/End: Complemental strand, 39332677 - 39332588
Alignment:
Q  83 caaagcactaaaatataaaagacataagatgcctgaaccaatacaacaaagccacatagtggagaactaaggaaaagaaaaacctgatct 172  Q
    ||||||||||||||||||||||||  ||||||||||| |||||||||| || || |||||||| |||| | |||||||||| || |||||    
T  39332677 caaagcactaaaatataaaagacaggagatgcctgaatcaatacaacagagtcatatagtggataacttatgaaaagaaaatccagatct 39332588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 335
Target Start/End: Complemental strand, 29061274 - 29061161
Alignment:
Q  222 taccctctctatgaaagttggaacaaaatgattgatattactagctaatctaatgcaattaaaccaactattctgtagcttccaaggcagctatggagct 321  Q
    |||| |||||||||||||| | |||||||||||| |||| || | ||| ||  |||||| |||||||||| | |||||||  ||||||| || ||||| |    
T  29061274 taccatctctatgaaagtttgtacaaaatgattgttatttctcgttaaacttttgcaataaaaccaactactttgtagctgtcaaggcaactttggaggt 29061175  T
Q  322 acccttttgggcac 335  Q
    |||||||| |||||    
T  29061174 acccttttaggcac 29061161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 81 - 128
Target Start/End: Original strand, 19393908 - 19393955
Alignment:
Q  81 atcaaagcactaaaatataaaagacataagatgcctgaaccaatacaa 128  Q
    ||||||||||||||||||||||||||  ||||| ||||||||||||||    
T  19393908 atcaaagcactaaaatataaaagacaggagatgtctgaaccaatacaa 19393955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 81 - 200
Target Start/End: Original strand, 41034786 - 41034905
Alignment:
Q  81 atcaaagcactaaaatataaaagacataagatgcctgaaccaatacaacaaagccacatagtggagaactaaggaaaagaaaaacctgatctctccctaa 180  Q
    ||||||||||||||||||||||||||  ||| | ||||||||||||| || || ||||  ||| | |||  | ||||||||||||| ||||| || | |     
T  41034786 atcaaagcactaaaatataaaagacaggagaggtctgaaccaatacaccagagtcacaatgtgaaaaacctatgaaaagaaaaacccgatctatcacaag 41034885  T
Q  181 aaaggaaaagtcctaaggaa 200  Q
    |||||||||| || ||||||    
T  41034886 aaaggaaaagacccaaggaa 41034905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 335
Target Start/End: Complemental strand, 39332476 - 39332403
Alignment:
Q  262 ctagctaatctaatgcaattaaaccaactattctgtagcttccaaggcagctatggagctacccttttgggcac 335  Q
    ||||||| |||| |||||| ||||||| |||||||||||| ||||| ||  | || || |||||||||||||||    
T  39332476 ctagctattctattgcaataaaaccaattattctgtagctgccaagtcatttttgaaggtacccttttgggcac 39332403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 145
Target Start/End: Original strand, 17114466 - 17114529
Alignment:
Q  81 atcaaagcactaaaatataaaagacataagatgcctgaaccaatacaacaaagccacatagtgga 145  Q
    |||||||||||||||||||||||| |  |||||| ||||||||||||| | ||| ||| ||||||    
T  17114466 atcaaagcactaaaatataaaaga-aagagatgcttgaaccaatacaatagagcgacaaagtgga 17114529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 81 - 188
Target Start/End: Complemental strand, 33191626 - 33191518
Alignment:
Q  81 atcaaagcactaaaatataaaagacataagatgcctgaaccaatacaacaa-agccacatagtggagaactaaggaaaagaaaaacctgatctctcccta 179  Q
    |||||||||| |||||||||||||||  |||||| |||||||||||||||| || ||||| | |||||||  | ||||||||||||| ||||| ||||||    
T  33191626 atcaaagcacgaaaatataaaagacaagagatgcatgaaccaatacaacaagagtcacatcgcggagaacctaagaaaagaaaaaccagatctatcccta 33191527  T
Q  180 aaaaggaaa 188  Q
     ||||||||    
T  33191526 gaaaggaaa 33191518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 130
Target Start/End: Original strand, 7543850 - 7543896
Alignment:
Q  84 aaagcactaaaatataaaagacataagatgcctgaaccaatacaaca 130  Q
    |||||| ||||||||||||||||  ||| ||||||||||||||||||    
T  7543850 aaagcaataaaatataaaagacaggagaggcctgaaccaatacaaca 7543896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 143
Target Start/End: Original strand, 19407635 - 19407697
Alignment:
Q  81 atcaaagcactaaaatataaaagacataagatgcctgaaccaatacaacaaagccacatagtg 143  Q
    ||||||| | ||||||||||||||||  ||| |||||||||||||||||| ||  ||||||||    
T  19407635 atcaaagtaataaaatataaaagacaggagaggcctgaaccaatacaacagagatacatagtg 19407697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 81 - 221
Target Start/End: Original strand, 18028331 - 18028471
Alignment:
Q  81 atcaaagcactaaaatataaaagacataagatgcctgaaccaatacaacaaagccacatagtggagaactaaggaaaagaaaaacctgatctctccctaa 180  Q
    |||||||||||||||||||||||| || |||||||||||||||||||||| || || | |||| | ||     |||||||||||   ||||| ||||||     
T  18028331 atcaaagcactaaaatataaaagatatgagatgcctgaaccaatacaacagagtcaaaaagtgtataagctgcgaaaagaaaaattagatctatccctat 18028430  T
Q  181 aaaggaaaagtcctaaggaaggaggtggcttagtccaccat 221  Q
    ||||||||  |||||||||  ||||||||| ||||||||||    
T  18028431 aaaggaaagatcctaaggagagaggtggctaagtccaccat 18028471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 81 - 145
Target Start/End: Original strand, 26796582 - 26796645
Alignment:
Q  81 atcaaagcactaaaatataaaagacataagatgcctgaaccaatacaacaaagccacatagtgga 145  Q
    ||||||||||||||| |||||||||| ||||||| ||||||||||||||| || |||| ||||||    
T  26796582 atcaaagcactaaaa-ataaaagacagaagatgcttgaaccaatacaacagagtcacaaagtgga 26796645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 84 - 207
Target Start/End: Complemental strand, 29347174 - 29347051
Alignment:
Q  84 aaagcactaaaatataaaagacataagatgcctgaaccaatacaacaaagccacatagtggagaactaaggaaaagaaaaacctgatctctccctaaaaa 183  Q
    |||||| ||||||||||||||||  ||| |||||||||||||||||| ||  |||||| | | |||  | ||||||| ||||| | ||| |||| | |||    
T  29347174 aaagcaataaaatataaaagacaggagaggcctgaaccaatacaacagagatacatagagtaaaacctatgaaaagagaaaccgggtctatcccaagaaa 29347075  T
Q  184 ggaaaagtcctaaggaaggaggtg 207  Q
     |||||| ||||| ||| ||||||    
T  29347074 agaaaaggcctaatgaaagaggtg 29347051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 222 - 293
Target Start/End: Original strand, 31163028 - 31163098
Alignment:
Q  222 taccctctctatgaaagttggaacaaaatgattgatattactagctaatctaatgcaattaaaccaactatt 293  Q
    |||| ||| |||||||||||| ||||||||||||||||| |||||| || |  ||||||| |||||||||||    
T  31163028 taccttctttatgaaagttggtacaaaatgattgatatttctagct-attttttgcaattgaaccaactatt 31163098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 130
Target Start/End: Complemental strand, 51525207 - 51525161
Alignment:
Q  84 aaagcactaaaatataaaagacataagatgcctgaaccaatacaaca 130  Q
    |||||||||||||||||||||||  ||| |||||| |||||||||||    
T  51525207 aaagcactaaaatataaaagacaggagaggcctgagccaatacaaca 51525161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 130
Target Start/End: Original strand, 3367243 - 3367292
Alignment:
Q  81 atcaaagcactaaaatataaaagacataagatgcctgaaccaatacaaca 130  Q
    |||||||||||||||||||||| |||  |||||| |||| ||||||||||    
T  3367243 atcaaagcactaaaatataaaaaacaggagatgcatgaatcaatacaaca 3367292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 130
Target Start/End: Original strand, 21844701 - 21844750
Alignment:
Q  81 atcaaagcactaaaatataaaagacataagatgcctgaaccaatacaaca 130  Q
    |||||| |||||||||||||||||||  ||||| |||||| |||||||||    
T  21844701 atcaaaacactaaaatataaaagacaggagatgtctgaactaatacaaca 21844750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 81 - 133
Target Start/End: Original strand, 3072281 - 3072333
Alignment:
Q  81 atcaaagcactaaaatataaaagacataagatgcctgaaccaatacaacaaag 133  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  3072281 atcaaagcactaaaatataaaagacaggagatgcctgaaccaatacaacaaag 3072333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 81 - 133
Target Start/End: Original strand, 8831017 - 8831069
Alignment:
Q  81 atcaaagcactaaaatataaaagacataagatgcctgaaccaatacaacaaag 133  Q
    ||||||||||||||||||||||||||  ||||| |||||||||||||||||||    
T  8831017 atcaaagcactaaaatataaaagacaggagatgtctgaaccaatacaacaaag 8831069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 81 - 200
Target Start/End: Original strand, 27786554 - 27786673
Alignment:
Q  81 atcaaagcactaaaatataaaagacataagatgcctgaaccaatacaacaaagccacatagtggagaactaaggaaaagaaaaacctgatctctccctaa 180  Q
    |||||||||||||||||||||| |||  ||| ||||||||||||||||||||| ||||  ||| |  ||  | ||||||||||  | ||||| |||| |     
T  27786554 atcaaagcactaaaatataaaatacaggagaggcctgaaccaatacaacaaagtcacaatgtgtaagacctatgaaaagaaaagtcggatctatcccaag 27786653  T
Q  181 aaaggaaaagtcctaaggaa 200  Q
    |||||||||| |||||||||    
T  27786654 aaaggaaaagacctaaggaa 27786673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 81 - 210
Target Start/End: Original strand, 399511 - 399640
Alignment:
Q  81 atcaaagcactaaaatataaaagacataagatgcctgaaccaatacaacaaagccacatagtggagaactaag-gaaaagaaaaacctgatctctcccta 179  Q
    |||||| |||||||||||||||||||  |||||||||||||||||||||| ||  |||  ||| | || || | |||||||||| || ||||| ||||||    
T  399511 atcaaatcactaaaatataaaagacaggagatgcctgaaccaatacaacagagttacaaggtgaataa-tacgtgaaaagaaaatccagatctatcccta 399609  T
Q  180 aaaaggaaaagtcctaaggaaggaggtggct 210  Q
     ||||||||   ||||||||| |||||||||    
T  399610 taaaggaaagaacctaaggaaagaggtggct 399640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 307
Target Start/End: Complemental strand, 3322192 - 3322107
Alignment:
Q  222 taccctctctatgaaagttggaacaaaatgattgatattactagctaatctaatgcaattaaaccaactattctgtagcttccaag 307  Q
    |||| |||||||||||||| | |||| ||||||||||||  |||||| |||  || ||| |||||||||||||||||||| |||||    
T  3322192 taccatctctatgaaagtttgtacaatatgattgatatttgtagctattcttttgtaataaaaccaactattctgtagctgccaag 3322107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 127
Target Start/End: Original strand, 14295245 - 14295291
Alignment:
Q  81 atcaaagcactaaaatataaaagacataagatgcctgaaccaataca 127  Q
    ||||||||||||||||||||||||||  ||| |||||||||||||||    
T  14295245 atcaaagcactaaaatataaaagacaggagaggcctgaaccaataca 14295291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 81 - 130
Target Start/End: Original strand, 28225452 - 28225501
Alignment:
Q  81 atcaaagcactaaaatataaaagacataagatgcctgaaccaatacaaca 130  Q
    ||||||| |||||||||| ||||| |||||||| ||||||||||||||||    
T  28225452 atcaaagaactaaaatattaaagatataagatgtctgaaccaatacaaca 28225501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 130
Target Start/End: Complemental strand, 29369455 - 29369406
Alignment:
Q  81 atcaaagcactaaaatataaaagacataagatgcctgaaccaatacaaca 130  Q
    ||||||||| ||||||||||||||||  ||| ||||| ||||||||||||    
T  29369455 atcaaagcaataaaatataaaagacaggagaggcctggaccaatacaaca 29369406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 127
Target Start/End: Original strand, 36206249 - 36206293
Alignment:
Q  83 caaagcactaaaatataaaagacataagatgcctgaaccaataca 127  Q
    ||||||||||||||||||||||||  ||| ||||||| |||||||    
T  36206249 caaagcactaaaatataaaagacaggagaggcctgaatcaataca 36206293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 83 - 149
Target Start/End: Complemental strand, 15188318 - 15188252
Alignment:
Q  83 caaagcactaaaatataaaagacataagatgcctgaaccaatacaacaaagccacatagtggagaac 149  Q
    ||||||||||||||||||||||||  |||||||||||| ||||||||| || ||||||||| |||||    
T  15188318 caaagcactaaaatataaaagacaagagatgcctgaacgaatacaacagagtcacatagtgaagaac 15188252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 207
Target Start/End: Original strand, 32278451 - 32278576
Alignment:
Q  81 atcaaagcactaaaatataaaagacataagatgcctgaaccaatacaacaaagccacatagtggagaactaaggaaaagaaaaacctgatctctccctaa 180  Q
    ||||| ||| ||||||||||||| || |||| ||||||||||||||| || || ||||||||| | |||  | ||||||| ||||| ||||| |||| |     
T  32278451 atcaaggcaataaaatataaaag-cagaagaggcctgaaccaatacatcagagtcacatagtgtaaaacctatgaaaagagaaaccggatctatcccaag 32278549  T
Q  181 aaaggaaaagtcctaaggaaggaggtg 207  Q
    ||| | || ||||||||||| ||||||    
T  32278550 aaaaggaatgtcctaaggaacgaggtg 32278576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 197
Target Start/End: Complemental strand, 36868645 - 36868529
Alignment:
Q  81 atcaaagcactaaaatataaaagacataagatgcctgaaccaatacaacaaagccacatagtggagaactaaggaaaagaaaaacctgatctctccctaa 180  Q
    |||||| ||||||||||||||||| |  ||| |||||||||||||||||| || ||||  ||| |  ||  | ||||||||||| | ||||| |||| |     
T  36868645 atcaaaacactaaaatataaaagataggagaggcctgaaccaatacaacacagtcacaatgtgtaagacctatgaaaagaaaaatcggatctatcccaag 36868546  T
Q  181 aaaggaaaagtcctaag 197  Q
    |||||||||| ||||||    
T  36868545 aaaggaaaagacctaag 36868529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 130
Target Start/End: Original strand, 788022 - 788071
Alignment:
Q  81 atcaaagcactaaaatataaaagacataagatgcctgaaccaatacaaca 130  Q
    |||||| || ||||||||||||||||  ||| ||||||||||||||||||    
T  788022 atcaaaacaataaaatataaaagacaggagaagcctgaaccaatacaaca 788071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0531 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 81 - 221
Target Start/End: Complemental strand, 10611 - 10471
Alignment:
Q  81 atcaaagcactaaaatataaaagacataagatgcctgaaccaatacaacaaagccacatagtggagaactaaggaaaagaaaaacctgatctctccctaa 180  Q
    ||||||||||||||||| ||||||||  |||||||||||||||||||||| || || | || | | |||    | ||||||| ||  ||||| ||||||     
T  10611 atcaaagcactaaaata-aaaagacaggagatgcctgaaccaatacaacagagtcagaaagcgtataacctgcggaaagaaagactagatctatccctat 10513  T
Q  181 aaaggaaaag-tcctaaggaaggaggtggcttagtccaccat 221  Q
    |||||||| | |||||||||| ||||||||| ||||||||||    
T  10512 aaaggaaaggatcctaaggaaagaggtggctaagtccaccat 10471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 81 - 130
Target Start/End: Original strand, 18811481 - 18811530
Alignment:
Q  81 atcaaagcactaaaatataaaagacataagatgcctgaaccaatacaaca 130  Q
    ||||||||||||||||||||||||||  ||| ||||||||||||||||||    
T  18811481 atcaaagcactaaaatataaaagacaggagaggcctgaaccaatacaaca 18811530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 81 - 221
Target Start/End: Complemental strand, 13502936 - 13502796
Alignment:
Q  81 atcaaagcactaaaatataaaagacataagatgcctgaaccaatacaacaaagccacatagtggagaactaaggaaaagaaaaacctgatctctccctaa 180  Q
    ||||||||||||||||||||||||||  |||||| |||| |||||||||| || || | |||| | |||    |||||| |||||  |||||  || ||     
T  13502936 atcaaagcactaaaatataaaagacaggagatgcatgaatcaatacaacagagtcagaaagtgtataacctgcgaaaaggaaaactagatctacccttat 13502837  T
Q  181 aaaggaaaagtcctaaggaaggaggtggcttagtccaccat 221  Q
    || |||||  |||||||||||||||||||| | ||||||||    
T  13502836 aatggaaagatcctaaggaaggaggtggctaattccaccat 13502796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 214
Target Start/End: Complemental strand, 18693446 - 18693348
Alignment:
Q  116 tgaaccaatacaacaaagccacatagtggagaactaaggaaaagaaaaacctgatctctccctaaaaaggaaaagtcctaaggaaggaggtggcttagt 214  Q
    ||||||||||||| |||| ||||||||||| |||    ||||||||||  | ||||| ||| ||  || |||| ||||||||||| |||||||||||||    
T  18693446 tgaaccaatacaagaaagtcacatagtggaaaacatgtgaaaagaaaattcagatctatccttagcaatgaaaggtcctaaggaaagaggtggcttagt 18693348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 331
Target Start/End: Original strand, 14296244 - 14296305
Alignment:
Q  270 tctaatgcaattaaaccaactattctgtagcttccaaggcagctatggagctacccttttgg 331  Q
    |||| ||||||| ||||||||||| |||| || |||||||| || ||||| |||||||||||    
T  14296244 tctattgcaattgaaccaactattatgtatctgccaaggcatctttggaggtacccttttgg 14296305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 89 - 217
Target Start/End: Original strand, 4263118 - 4263244
Alignment:
Q  89 actaaaatataaaagacataagatgcctgaaccaatacaacaaagccacatagtggagaactaaggaaaagaaaaacctgatctctccctaaaaaggaaa 188  Q
    |||||||||||||| |||  |||||||| ||||||||||| |||| ||||||||||| |||    ||||||||||| | || ||  |||||  |||||||    
T  4263118 actaaaatataaaa-acaggagatgcct-aaccaatacaagaaagtcacatagtggaaaacatgtgaaaagaaaaatcagagctacccctagcaaggaaa 4263215  T
Q  189 agtcctaaggaaggaggtggcttagtcca 217  Q
     ||||||||||| ||||||||||| ||||    
T  4263216 ggtcctaaggaaagaggtggcttaatcca 4263244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 207
Target Start/End: Complemental strand, 3949714 - 3949589
Alignment:
Q  81 atcaaagcactaaaatataaaagacataagatgcctgaaccaatacaacaaagccacatagtggagaactaaggaaaagaaaaacctgatctctccctaa 180  Q
    ||||||||| ||||||||||||| ||| ||| | |||||||||||||||| || ||||||||| | |||  | ||||||| ||||| ||||| |||  |     
T  3949714 atcaaagcaataaaatataaaag-catgagaggtctgaaccaatacaacagagacacatagtgtaaaacctatgaaaagagaaaccggatctatcctaag 3949616  T
Q  181 aaaggaaaagtcctaaggaaggaggtg 207  Q
    ||||| || | ||||||||| ||||||    
T  3949615 aaagggaatgacctaaggaacgaggtg 3949589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 275 - 334
Target Start/End: Complemental strand, 25167972 - 25167913
Alignment:
Q  275 tgcaattaaaccaactattctgtagcttccaaggcagctatggagctacccttttgggca 334  Q
    ||||||| |||||||||||||||| ||  |||||| ||| ||||| ||||||||||||||    
T  25167972 tgcaattgaaccaactattctgtatctgtcaaggcggctttggaggtacccttttgggca 25167913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 81 - 206
Target Start/End: Original strand, 18522040 - 18522164
Alignment:
Q  81 atcaaagcactaaaatataaaagacataagatgcctgaaccaatacaacaaagccacatagtggagaactaaggaaaagaaaaacctgatctctccctaa 180  Q
    ||||||||| ||||||||||||||||  ||| ||||||||||||| | || || ||||||  ||| |||  |  |||| ||||||| ||||| |||| ||    
T  18522040 atcaaagcaataaaatataaaagacaggagaggcctgaaccaatatatcagagtcacata-aggaaaacctacaaaaacaaaaaccggatctatcccaaa 18522138  T
Q  181 aaaggaaaagtcctaaggaaggaggt 206  Q
    ||| |||| ||||||||||| |||||    
T  18522139 aaatgaaaggtcctaaggaaagaggt 18522164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 81 - 130
Target Start/End: Complemental strand, 19852836 - 19852788
Alignment:
Q  81 atcaaagcactaaaatataaaagacataagatgcctgaaccaatacaaca 130  Q
    ||||||||||||||||| ||||||||  ||||||||||||||||||||||    
T  19852836 atcaaagcactaaaata-aaaagacaggagatgcctgaaccaatacaaca 19852788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 81 - 206
Target Start/End: Complemental strand, 37050380 - 37050256
Alignment:
Q  81 atcaaagcactaaaatataaaagacataagatgcctgaaccaatacaacaaagccacatagtggagaactaaggaaaagaaaaacctgatctctccctaa 180  Q
    ||||||||| ||||||||||||| ||| ||| ||| |||||||||||||| || ||||||||| | |||  | ||||||| ||||  ||||| |||| |     
T  37050380 atcaaagcaataaaatataaaag-catgagaggcccgaaccaatacaacagagtcacatagtgtaaaacctatgaaaagagaaactggatctatcccaat 37050282  T
Q  181 aaaggaaaagtcctaaggaaggaggt 206  Q
    ||||| || |||| |||||| |||||    
T  37050281 aaagggaatgtccaaaggaacgaggt 37050256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 89 - 132
Target Start/End: Complemental strand, 22813895 - 22813852
Alignment:
Q  89 actaaaatataaaagacataagatgcctgaaccaatacaacaaa 132  Q
    |||||||||||||||||| |||||| ||||||||||| ||||||    
T  22813895 actaaaatataaaagacacaagatgtctgaaccaatataacaaa 22813852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 130
Target Start/End: Original strand, 16593537 - 16593585
Alignment:
Q  81 atcaaagcactaaaatataaaagacataagatgcctgaaccaatacaaca 130  Q
    ||||||||||||||||| ||||||||  ||||| ||||||||||||||||    
T  16593537 atcaaagcactaaaata-aaaagacaggagatgtctgaaccaatacaaca 16593585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 330
Target Start/End: Original strand, 16832081 - 16832186
Alignment:
Q  225 cctctctatgaaagttggaacaaaatgattgatattactagctaatctaatgcaattaaaccaactattctgtagcttccaaggcagctatggagctacc 324  Q
    ||||||||||||| || ||  ||||  ||||||||| ||||||| ||| |||||| | |||| |||||| |||| || ||||| ||||| |||||  |||    
T  16832081 cctctctatgaaaatttgagtaaaagtattgatattcctagctattctgatgcaaatgaaccgactattatgtatctgccaagacagctttggaggcacc 16832180  T
Q  325 cttttg 330  Q
    ||||||    
T  16832181 cttttg 16832186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University