View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3360_high_5 (Length: 238)
Name: NF3360_high_5
Description: NF3360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3360_high_5 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 7259499 - 7259719
Alignment:
| Q |
18 |
ttttgatgaaagtgtagtgttaatctttagcctagtgttccttctccaaactcctcaacaaattatgacttcaacttaaaatcttaatctagcnnnnnnn |
117 |
Q |
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| T |
7259499 |
ttttgataaaagtgtagtgttaatctttagcctagtgttccttctccaaactcctcaacaaattatgacttcaacttaaaatcttaatctagcttttttt |
7259598 |
T |
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| Q |
118 |
aggggaaaatcttaatcaaagttaacattgattagttaacactttgtccaaccttaaatatattttctatcctactgaccttttcagtttcaagacccaa |
217 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
7259599 |
aggggaaaatcttaatcaaagttaacattgattggttaacactttgtccaaccttaaatatattttctatcctattgaccttttcagtttcaagacccaa |
7259698 |
T |
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| Q |
218 |
aatggcaataacaaacaagtt |
238 |
Q |
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|||||||||| |||||||||| |
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| T |
7259699 |
aatggcaatagcaaacaagtt |
7259719 |
T |
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