View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3360_high_6 (Length: 236)
Name: NF3360_high_6
Description: NF3360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3360_high_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 14 - 220
Target Start/End: Original strand, 9086823 - 9087029
Alignment:
| Q |
14 |
caaaggtgagtcctaaggttatgcatatgtaacactcatctactcggttaaagtataatcgaaaaccaaattatttggaataatggaatcaaataattat |
113 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9086823 |
caaaggtgagtcctaaggttatgcaaatgtaacactcatctactcggttaaagtataatcgaaaaccaaattatttggaataatggaatcaaataattat |
9086922 |
T |
|
| Q |
114 |
ttgggattaatattatcatacctgttgtgagtatgtacttaatccaaaatctgaaactttaagaacaccatttgtgtctaaaagaagattctctggctgc |
213 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
9086923 |
ttgggattaatattatcatacctgctgtgagtatgtacttaatccaaaatctgaaactttaagaacaccatttgtatctaaaagaagattctctggctgc |
9087022 |
T |
|
| Q |
214 |
aaaatat |
220 |
Q |
| |
|
||||||| |
|
|
| T |
9087023 |
aaaatat |
9087029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 24 - 220
Target Start/End: Original strand, 9078056 - 9078252
Alignment:
| Q |
24 |
tcctaaggttatgcatatgtaacactcatctactcggttaaagtataatcgaaaaccaaattatttggaataatggaatcaaataattatttgggattaa |
123 |
Q |
| |
|
|||||||||||| || |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
9078056 |
tcctaaggttattcaaatgtaacactcatctactaggttaaagtataatccaaaaccaaattatttggaataattgaatcaaataattatttgggattaa |
9078155 |
T |
|
| Q |
124 |
tattatcatacctgttgtgagtatgtacttaatccaaaatctgaaactttaagaacaccatttgtgtctaaaagaagattctctggctgcaaaatat |
220 |
Q |
| |
|
||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
9078156 |
tataatcatacctgctgtgagtatgtacttaatccaaaatctgaaactttaagaacaccatttgtatctaaaagaagattctctggctgcaaaatat |
9078252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University