View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3360_low_1 (Length: 515)
Name: NF3360_low_1
Description: NF3360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3360_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-162; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 203 - 500
Target Start/End: Complemental strand, 31110633 - 31110336
Alignment:
| Q |
203 |
ttctatacttgggagacatttggataaactacttaatgaaacatttattcaataagccgttattaaatgagagcttatctataagttgtatctacaatta |
302 |
Q |
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| T |
31110633 |
ttctatacttgggagacatttggataaactacttaatgaaacatttattcaataagccgttattaaatgagagcttatctataagttgtatctacaatta |
31110534 |
T |
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| Q |
303 |
aagagtgaataggaataaagttcatataagctttgcacaagctgtttctaaaagttatatccgagagtttatgaaagtaagttgaaaacaacttattttt |
402 |
Q |
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| T |
31110533 |
aagagtgaataggaataaagttcatataagctttgtacaagctgtttctaaaagttatatccgagagtttatgaaagtaagttgaaaacaacttattttt |
31110434 |
T |
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| Q |
403 |
acttgataagctatttctagaagctctttcaaactcaatcacttaaataagtgttttatgtcataagatacaccaaaataagctcttaaaaacacccc |
500 |
Q |
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| T |
31110433 |
acttgataagctatttctaaaagctctttcaaactcaatcacttaaataagtgttttatgtcataagatacaccaaaataagctcttaaaaacacccc |
31110336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 16 - 146
Target Start/End: Complemental strand, 31110820 - 31110690
Alignment:
| Q |
16 |
ttatcatccaacaaaacatatttcttggttcttggataagtgataaaattacaattggaactatttaaaatccttcaaataattgatccatgctattgct |
115 |
Q |
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| T |
31110820 |
ttatcatccaacaaaacatatttcttggttcttggataagtgataaaattacaattggaactatttaaaatccttcaaataattgatccatgctattgct |
31110721 |
T |
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| Q |
116 |
tgagtaagaaattgtatgttggacagataac |
146 |
Q |
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| T |
31110720 |
tgagtaagaaattgtatgttggacagataac |
31110690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 365 - 397
Target Start/End: Original strand, 778416 - 778448
Alignment:
| Q |
365 |
gagagtttatgaaagtaagttgaaaacaactta |
397 |
Q |
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| T |
778416 |
gagagcttatgaaagtaagttgaaaacaactta |
778448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 398
Target Start/End: Original strand, 24281074 - 24281107
Alignment:
| Q |
365 |
gagagtttatgaaagtaagttgaaaacaacttat |
398 |
Q |
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| T |
24281074 |
gagagcttatgaaagtaagttgaaaacaacttat |
24281107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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