View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3360_low_2 (Length: 409)
Name: NF3360_low_2
Description: NF3360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3360_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 169 - 393
Target Start/End: Complemental strand, 27744539 - 27744315
Alignment:
| Q |
169 |
actttgtagtaatggcgaagaaaatcagattttaaagtgaggttgttttctatatacctgcctctcttgtcgattggtgcagaataagagaaaaaagaat |
268 |
Q |
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| T |
27744539 |
actttgtagtaatggcgaagaaaatcagattttaaagtgaggttgttttctatatacctgcctctcttgtcgattggtgcagaataagagaaaaaagaat |
27744440 |
T |
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| Q |
269 |
tgtcattgaacatgtgcttgaagcgagagtcaattgccacttttgtttcatcctttcgagcctctcgaaaacgagggtctgtgtgcattcctacaaatcg |
368 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27744439 |
tgtcattgaacatgtgcttgaagcgagagtcaattgccacttttgtttcatcctttcgagcctctcgaaaacgagggtctgtgtgcattcctacaaatcg |
27744340 |
T |
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| Q |
369 |
aggatcactgataagcttcttcttc |
393 |
Q |
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||||||||||||||||||||||||| |
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| T |
27744339 |
aggatcactgataagcttcttcttc |
27744315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 1116551 - 1116631
Alignment:
| Q |
1 |
gctttaccactcgtcatctccgttttcaaacctctctcaaccaccacccccctccactctacacttctacgccgccgctgt |
81 |
Q |
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| T |
1116551 |
gctttaccactcgtcatctccgttttcaaacctctctcaaccaccacccccctccactctacacttctacgccgccgctgt |
1116631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 169 - 220
Target Start/End: Complemental strand, 49513388 - 49513337
Alignment:
| Q |
169 |
actttgtagtaatggcgaagaaaatcagattttaaagtgaggttgttttcta |
220 |
Q |
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| T |
49513388 |
actttgtagtaatggcgaagaaaatcagatttaaaagtgaggttgttttcta |
49513337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 333 - 393
Target Start/End: Complemental strand, 49513321 - 49513261
Alignment:
| Q |
333 |
tcgaaaacgagggtctgtgtgcattcctacaaatcgaggatcactgataagcttcttcttc |
393 |
Q |
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||||||| ||||||||||| ||| ||||||||| ||||||||| ||||||||||||||||| |
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| T |
49513321 |
tcgaaaaagagggtctgtgagcactcctacaaaccgaggatcattgataagcttcttcttc |
49513261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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