View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3360_low_4 (Length: 287)
Name: NF3360_low_4
Description: NF3360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3360_low_4 |
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| [»] scaffold0034 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 14 - 271
Target Start/End: Original strand, 31037949 - 31038206
Alignment:
| Q |
14 |
agaccataataagattactaatcacaaaagcagttaatacagagtaaaaggtttacctttctgcctttaaatctttctactaagtctttgaatggagctt |
113 |
Q |
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| T |
31037949 |
agaccataataagattactaatcacaaaagcagttaatacagagtaaaaggtttacctttctgcctttaaatctttctactaagtctttgaatggagctt |
31038048 |
T |
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| Q |
114 |
ggacttgaggatggtcaagtgcacgtatgaatcgatccgagtctataccaattggaaactgacattcaagataaaagaaataagtaagtagttcatattt |
213 |
Q |
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| T |
31038049 |
ggacttgaggatggtcaagtgcacgtatgaatcgatccgagtctataccaattggaaactgacattcaagataaaagaaataagtaagtagttcatattt |
31038148 |
T |
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| Q |
214 |
taatctcatcatgttaattgcttaattcctaagataagtttcattcaaaacattttag |
271 |
Q |
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| T |
31038149 |
taatctcatcatgttaattgcttaattcctaagataagtttcattcaaaacattttag |
31038206 |
T |
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Target: scaffold0034 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0034
Description:
Target: scaffold0034; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 116 - 183
Target Start/End: Original strand, 90653 - 90720
Alignment:
| Q |
116 |
acttgaggatggtcaagtgcacgtatgaatcgatccgagtctataccaattggaaactgacattcaag |
183 |
Q |
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| T |
90653 |
acttgaggaaggtctagtgcacgtataaatcgtccagagtctatcccgatcggaaactgacattcaag |
90720 |
T |
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