View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3361_high_10 (Length: 315)

Name: NF3361_high_10
Description: NF3361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3361_high_10
NF3361_high_10
[»] chr5 (1 HSPs)
chr5 (1-299)||(36238952-36239250)


Alignment Details
Target: chr5 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 36238952 - 36239250
Alignment:
Q  1 tgggggtgtaagtggaggaatagaggtttcagataaagggtgcttaggagtaccaggttgtgcctcccatacaaagggaattgcaattgatgtttctcca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  36238952 tgggggtgtaagtggaggaatagaggtttcagataaagggtgcttaggagtaccaggttgtgcctcccatacaaagggaattgcaactgatctttctcca 36239051  T
Q  101 taatacatgacccttgatgaagtgttggcactagaagcttcctttgattttagccttaagaagaatttatcatcttgctttattctgaaagacttgtcaa 200  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36239052 taatacatgacccttgatgaagcgttggcactagaagcttcctttgattttagccttaagaagaatttatcatcttgctttattctgaaagacttgtcaa 36239151  T
Q  201 ttgagagatgattgataccatcattgatcattttttgggtttagaaatattgtatcttgttttgaactatgatataaaataagcctcaaaggaaaatgg 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36239152 ttgagagatgattgataccatcattgatcattttttgggtttagaaatattgtatcttgttttgaactatgatataaaataagcctcaaaggaaaatgg 36239250  T

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