View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3361_high_11 (Length: 276)
Name: NF3361_high_11
Description: NF3361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3361_high_11 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 16 - 276
Target Start/End: Original strand, 47252887 - 47253147
Alignment:
| Q |
16 |
atgagtaattaagtaaccatatgcacagagatccaggttcaagtatctaagccaccaaacatattttgcctaaggctaactaagttgattgccaaacacc |
115 |
Q |
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| T |
47252887 |
atgagtaattaagtaaccatatgcacagagatccaggttcaagtatctaagccaccaaacatattttgcctaaggctaactaagttgattgccaaacacc |
47252986 |
T |
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| Q |
116 |
acttaacccctaagacagtatttctgatttagattgtcactcttctacaaagtaatgatttggtatttctggagatgaaggaaggtttgccacattcttg |
215 |
Q |
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| T |
47252987 |
acttaacccctaagacagtatttctgattcagattgtcactcttctacaaagtaatgatttggtatttctggagatgaaggaaggtttgccacattcttg |
47253086 |
T |
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| Q |
216 |
aactgtttcaaacaaacacttcaagtcaatcaacttgcaataataagaaccagctatatat |
276 |
Q |
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| T |
47253087 |
aactgtttcaaacaaacacttcaagtcaatcaacttgcaataataagaaccagctatatat |
47253147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 154 - 264
Target Start/End: Original strand, 47248227 - 47248337
Alignment:
| Q |
154 |
actcttctacaaagtaatgatttggtatttctggagatgaaggaaggtttgccacattcttgaactgtttcaaacaaacacttcaagtcaatcaacttgc |
253 |
Q |
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| T |
47248227 |
actctttttcaaagtaatgatttggtatctctggcgatgaaggcaggtttgccacacattttaactgttccagaaaacgatttcaagtcaatgaacttgc |
47248326 |
T |
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| Q |
254 |
aataataagaa |
264 |
Q |
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| T |
47248327 |
aataataagaa |
47248337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 156 - 264
Target Start/End: Original strand, 47241780 - 47241888
Alignment:
| Q |
156 |
tcttctacaaagtaatgatttggtatttctggagatgaaggaaggtttgccacattcttgaactgtttcaaacaaacacttcaagtcaatcaacttgcaa |
255 |
Q |
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| T |
47241780 |
tcttcttcaaagtaataatttggtatctctggcgagctagggaggtttgccacatatttgaactgttccagacaatgagttcaagtcaaccaacttgcat |
47241879 |
T |
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| Q |
256 |
taataagaa |
264 |
Q |
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| T |
47241880 |
taataagaa |
47241888 |
T |
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