View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3361_high_12 (Length: 274)

Name: NF3361_high_12
Description: NF3361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3361_high_12
NF3361_high_12
[»] chr4 (3 HSPs)
chr4 (21-262)||(46767225-46767466)
chr4 (144-214)||(4670443-4670513)
chr4 (108-181)||(29808110-29808183)
[»] scaffold0041 (1 HSPs)
scaffold0041 (147-214)||(83897-83964)
[»] chr7 (1 HSPs)
chr7 (147-214)||(40882319-40882386)
[»] chr5 (1 HSPs)
chr5 (108-162)||(18605158-18605212)
[»] scaffold0127 (1 HSPs)
scaffold0127 (147-207)||(14603-14663)
[»] chr3 (1 HSPs)
chr3 (140-182)||(48601334-48601376)
[»] chr8 (1 HSPs)
chr8 (151-211)||(34492603-34492663)


Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 21 - 262
Target Start/End: Complemental strand, 46767466 - 46767225
Alignment:
Q  21 tgtttccctcatttgctatcattgagcaggagggaatagtatatctcttatagtctccattgcctctcttactcgttaatgtttatttgtaaaatatggg 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46767466 tgtttccctcatttgctatcattgagcaggagggaatagtatatctcttatagtctccattgcctctcttactcgttaatgtttatttgtaaaatatggg 46767367  T
Q  121 ctaattcctttgagctctctttgtatttgatttgtggttttagccgttttatcggttataccacctttatctattagaatctcatctctttcgatagaat 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  46767366 ctaattcctttgagctctctttgtatttgatttgtggttttagccgttttatcggttataccacctttatctattagaatctcatctctttcaatagaat 46767267  T
Q  221 gtcttcttcagttttgaagtttaaaatcttgaaattcttctc 262  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  46767266 gtcttcttcagttttgaagtttaaaatcttgaaattcttctc 46767225  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 144 - 214
Target Start/End: Original strand, 4670443 - 4670513
Alignment:
Q  144 tatttgatttgtggttttagccgttttatcggttataccacctttatctattagaatctcatctctttcga 214  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||||| |||| |||||||||||| |||||    
T  4670443 tatttgatttgtggttttagccgttttattggttataccgcctttatatattggaatctcatctcgttcga 4670513  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 108 - 181
Target Start/End: Complemental strand, 29808183 - 29808110
Alignment:
Q  108 tgtaaaatatgggctaattcctttgagctctctttgtatttgatttgtggttttagccgttttatcggttatac 181  Q
    ||||||||||||||| || ||| ||||||   |||||| |||||||||||||||| ||||||| ||||||||||    
T  29808183 tgtaaaatatgggcttatccctctgagcttcgtttgtacttgatttgtggttttaaccgttttgtcggttatac 29808110  T

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Target: scaffold0041 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 147 - 214
Target Start/End: Complemental strand, 83964 - 83897
Alignment:
Q  147 ttgatttgtggttttagccgttttatcggttataccacctttatctattagaatctcatctctttcga 214  Q
    |||||||||||||||| ||||||| ||| ||||||| |||||||||||| |||||||||||| |||||    
T  83964 ttgatttgtggttttaaccgttttgtcgattataccgcctttatctattggaatctcatctcgttcga 83897  T

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Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 147 - 214
Target Start/End: Original strand, 40882319 - 40882386
Alignment:
Q  147 ttgatttgtggttttagccgttttatcggttataccacctttatctattagaatctcatctctttcga 214  Q
    |||||||||||||||| ||||||| ||| ||||||| |||||||||||| |||||||||||| |||||    
T  40882319 ttgatttgtggttttaaccgttttgtcgattataccgcctttatctattggaatctcatctcgttcga 40882386  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 108 - 162
Target Start/End: Complemental strand, 18605212 - 18605158
Alignment:
Q  108 tgtaaaatatgggctaattcctttgagctctctttgtatttgatttgtggtttta 162  Q
    ||||||| |||||||||| |||||||||||| |||||| ||||||||||||||||    
T  18605212 tgtaaaacatgggctaatccctttgagctctttttgtacttgatttgtggtttta 18605158  T

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Target: scaffold0127 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 147 - 207
Target Start/End: Original strand, 14603 - 14663
Alignment:
Q  147 ttgatttgtggttttagccgttttatcggttataccacctttatctattagaatctcatct 207  Q
    |||||||||||||||||||||| | ||| |||||||  |||||| ||||||||||||||||    
T  14603 ttgatttgtggttttagccgttctgtcgattataccgtctttatttattagaatctcatct 14663  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 182
Target Start/End: Complemental strand, 48601376 - 48601334
Alignment:
Q  140 tttgtatttgatttgtggttttagccgttttatcggttatacc 182  Q
    ||||||||||||||||||||||| ||||||||| |||||||||    
T  48601376 tttgtatttgatttgtggttttaaccgttttattggttatacc 48601334  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 211
Target Start/End: Complemental strand, 34492663 - 34492603
Alignment:
Q  151 tttgtggttttagccgttttatcggttataccacctttatctattagaatctcatctcttt 211  Q
    |||||||||||| | ||||| |  |||||||||||||| |||||| |||||||||||||||    
T  34492663 tttgtggttttaacagttttgtaagttataccacctttttctattggaatctcatctcttt 34492603  T

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