View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3361_high_13 (Length: 251)

Name: NF3361_high_13
Description: NF3361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3361_high_13
NF3361_high_13
[»] chr5 (9 HSPs)
chr5 (3-241)||(10214540-10214779)
chr5 (109-228)||(10107382-10107497)
chr5 (3-71)||(9678849-9678917)
chr5 (3-71)||(9679071-9679139)
chr5 (3-71)||(9679293-9679361)
chr5 (3-73)||(10100936-10101006)
chr5 (3-78)||(10107549-10107624)
chr5 (128-193)||(10104665-10104727)
chr5 (3-73)||(10104739-10104809)
[»] chr7 (1 HSPs)
chr7 (3-73)||(1470500-1470570)
[»] chr1 (1 HSPs)
chr1 (5-74)||(35121792-35121861)
[»] chr4 (1 HSPs)
chr4 (5-66)||(16622651-16622712)


Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 3 - 241
Target Start/End: Original strand, 10214540 - 10214779
Alignment:
Q  3 gctgtagatgatcgttcttggcctagttcaactaaccgggatggtcgcatggttgtctgacagactcaaaaacccccttttta-tcatgttttttgcgac 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| | || |||||| ||||||||||||||||    
T  10214540 gctgtagatgatcgttcttggcctagttcaactaaccgggatggtcacatggttgtctgacagattcaaaaccaccttttttaatcatgttttttgcgac 10214639  T
Q  102 aaacccccaagttctacattgcacttttttattttacaagaaaacacaccataaaaaataaatatgattttttgagaagggaatgataatgtttttacct 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10214640 aaacccccaagttctacattgcacttttttattttacaagaaaacacaccataaaaaataaatatgattttttgagaagggaatgataatgtttttacct 10214739  T
Q  202 tggttcacaaagtggacatgggaggttcttgttgtctgtg 241  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  10214740 tggttcacaaagtggacatgggaggttcttgttgtttgtg 10214779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 109 - 228
Target Start/End: Complemental strand, 10107497 - 10107382
Alignment:
Q  109 caagttctacattgcacttttttattttacaagaaaacacaccataaaaaataaatatgattttttgagaagggaatgataatgtttttaccttggttca 208  Q
    ||||| ||||||||||||| ||| | |||||| ||||||||||||||||| |||||||||||||| || ||| |||||||||||  || |||| ||||||    
T  10107497 caagtactacattgcacttcttt-tgttacaataaaacacaccataaaaa-taaatatgatttttggaaaagagaatgataatg--ttaacctaggttca 10107402  T
Q  209 caaagtggacatgggaggtt 228  Q
    |||||||||||| |||||||    
T  10107401 caaagtggacattggaggtt 10107382  T

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Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 71
Target Start/End: Original strand, 9678849 - 9678917
Alignment:
Q  3 gctgtagatgatcgttcttggcctagttcaactaaccgggatggtcgcatggttgtctgacagactcaa 71  Q
    |||||||||||||||||| |||||||||||||| |||| ||||||| || |||||||||||||||||||    
T  9678849 gctgtagatgatcgttctcggcctagttcaactgaccgagatggtcacacggttgtctgacagactcaa 9678917  T

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Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 71
Target Start/End: Original strand, 9679071 - 9679139
Alignment:
Q  3 gctgtagatgatcgttcttggcctagttcaactaaccgggatggtcgcatggttgtctgacagactcaa 71  Q
    |||||||||||||||||| |||||||||||||| |||| ||||||| || |||||||||||||||||||    
T  9679071 gctgtagatgatcgttctcggcctagttcaactgaccgagatggtcacacggttgtctgacagactcaa 9679139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 71
Target Start/End: Original strand, 9679293 - 9679361
Alignment:
Q  3 gctgtagatgatcgttcttggcctagttcaactaaccgggatggtcgcatggttgtctgacagactcaa 71  Q
    |||||||||||||||||| |||||||||||||| |||| ||||||| || |||||||||||||||||||    
T  9679293 gctgtagatgatcgttctcggcctagttcaactgaccgagatggtcacacggttgtctgacagactcaa 9679361  T

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Target: chr5; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 73
Target Start/End: Complemental strand, 10101006 - 10100936
Alignment:
Q  3 gctgtagatgatcgttcttggcctagttcaactaaccgggatggtcgcatggttgtctgacagactcaaaa 73  Q
    |||||||||||||||||| |||||||||||||| || | ||||||| || |||||||||||||||||||||    
T  10101006 gctgtagatgatcgttctcggcctagttcaactgactgagatggtcacacggttgtctgacagactcaaaa 10100936  T

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Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 78
Target Start/End: Complemental strand, 10107624 - 10107549
Alignment:
Q  3 gctgtagatgatcgttcttggcctagttcaactaaccgggatggtcgcatggttgtctgacagactcaaaaacccc 78  Q
    ||||||| |||||||||  | ||| ||||||||  ||||||||||| |||||||||||||||||||||||| ||||    
T  10107624 gctgtaggtgatcgttcccgtccttgttcaactggccgggatggtcacatggttgtctgacagactcaaaaccccc 10107549  T

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Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 193
Target Start/End: Complemental strand, 10104727 - 10104665
Alignment:
Q  128 ttttattttacaagaaaacacaccataaaaaataaatatgattttttgagaagggaatgataatgt 193  Q
    |||| |||||||| ||||| |||||||||||| ||||||||   ||||||||||||||||||||||    
T  10104727 tttttttttacaacaaaacgcaccataaaaaacaaatatga---tttgagaagggaatgataatgt 10104665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 73
Target Start/End: Complemental strand, 10104809 - 10104739
Alignment:
Q  3 gctgtagatgatcgttcttggcctagttcaactaaccgggatggtcgcatggttgtctgacagactcaaaa 73  Q
    |||||||||||||||||||||| |||||||||| || | ||||||| || ||||||||  |||||| ||||    
T  10104809 gctgtagatgatcgttcttggcttagttcaactgactgagatggtcacacggttgtctttcagactgaaaa 10104739  T

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Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 3 - 73
Target Start/End: Complemental strand, 1470570 - 1470500
Alignment:
Q  3 gctgtagatgatcgttcttggcctagttcaactaaccgggatggtcgcatggttgtctgacagactcaaaa 73  Q
    ||||||||||||||||||||||||||||||||| || | ||||||| || |||||||||||||||||||||    
T  1470570 gctgtagatgatcgttcttggcctagttcaactgactgagatggtcacacggttgtctgacagactcaaaa 1470500  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 74
Target Start/End: Complemental strand, 35121861 - 35121792
Alignment:
Q  5 tgtagatgatcgttcttggcctagttcaactaaccgggatggtcgcatggttgtctgacagactcaaaaa 74  Q
    ||||||||||||||||  | ||||||||||| | |||||||||| ||  ||||||||||||||| |||||    
T  35121861 tgtagatgatcgttctcagtctagttcaactgatcgggatggtcacacagttgtctgacagactaaaaaa 35121792  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 16622712 - 16622651
Alignment:
Q  5 tgtagatgatcgttcttggcctagttcaactaaccgggatggtcgcatggttgtctgacaga 66  Q
    ||||||| |||||||| ||||||  |||||| |  ||||||||| |||||||||||||||||    
T  16622712 tgtagattatcgttctcggcctatatcaactgatagggatggtcacatggttgtctgacaga 16622651  T

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