View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3361_high_14 (Length: 249)
Name: NF3361_high_14
Description: NF3361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3361_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 37182027 - 37181802
Alignment:
| Q |
1 |
tgtgaatagttatagaaggtgttagacgacaatactagtaaatacatgagcatgatagatagcgatactatgtgaggagccagacttatctttgtaaaat |
100 |
Q |
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| T |
37182027 |
tgtgaatagttatagaaggtgttagacgacaatactagtaaat------gcatgatagatagcgatactatgtgaggagccaaacttatctttgtaaaat |
37181934 |
T |
|
| Q |
101 |
ggtaaaaaacgcatgtagtaacaattgaattcatgaaatagcttaatgataaagactacgaaatacctcacattgtcattatgttcatttttgaaaattg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
37181933 |
ggtaaaaaacgcatgtagtaacaattgaattcatgaaatagcttaatgataaaaactatgaaatacctcacattgtcattatgttcatttttgaaaattg |
37181834 |
T |
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| Q |
201 |
aatcctctccaagactctaagtctgcagtata |
232 |
Q |
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|||| ||||||||||||||||||||||||||| |
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| T |
37181833 |
aatcttctccaagactctaagtctgcagtata |
37181802 |
T |
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