View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3361_high_17 (Length: 245)
Name: NF3361_high_17
Description: NF3361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3361_high_17 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 16 - 245
Target Start/End: Original strand, 28977422 - 28977651
Alignment:
| Q |
16 |
atcatcggacggtaaccgaaatctacaacaaggacacgtgttcttctttcccaaccatggtaaaatacacatccaatgaaacaaatgctgacatggcaac |
115 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28977422 |
atcatcggacggtaaccgaaacctacaacaaggacacgtgttcttctttcccaaccatggtaaaatacacatccaatgaaacaaatgctgacatggcaac |
28977521 |
T |
|
| Q |
116 |
tcacacacgtctctccctacttgcatctcttctttacataccacacactctctcccaccaacactcacctccaccgccggcaaagaaaccaccgtcgccg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28977522 |
tcacacacgtctctccctacttgcatctcttctttacatatcacacactctctcccaccaacactcacctccaccgccggcaaagaaaccaccgtcgccg |
28977621 |
T |
|
| Q |
216 |
ccgaagccgccacctccttcacttccttcc |
245 |
Q |
| |
|
||||||||||||||||||||||||| |||| |
|
|
| T |
28977622 |
ccgaagccgccacctccttcacttctttcc |
28977651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University