View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3361_high_5 (Length: 363)

Name: NF3361_high_5
Description: NF3361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3361_high_5
NF3361_high_5
[»] chr3 (2 HSPs)
chr3 (18-339)||(39991709-39992028)
chr3 (174-214)||(21816645-21816685)
[»] chr2 (2 HSPs)
chr2 (18-359)||(13809623-13809966)
chr2 (51-359)||(7190697-7191002)
[»] chr8 (3 HSPs)
chr8 (18-359)||(14817364-14817705)
chr8 (18-359)||(14828034-14828375)
chr8 (18-359)||(9311695-9312035)
[»] chr4 (1 HSPs)
chr4 (18-359)||(11039251-11039591)
[»] chr1 (3 HSPs)
chr1 (23-359)||(46014906-46015241)
chr1 (23-359)||(2939316-2939650)
chr1 (23-359)||(33332385-33332725)
[»] chr5 (2 HSPs)
chr5 (18-359)||(19718399-19718746)
chr5 (67-113)||(37967468-37967514)
[»] scaffold0029 (1 HSPs)
scaffold0029 (18-359)||(70876-71215)
[»] chr6 (1 HSPs)
chr6 (18-359)||(17970991-17971327)
[»] chr7 (1 HSPs)
chr7 (23-359)||(45087769-45088103)


Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 18 - 339
Target Start/End: Original strand, 39991709 - 39992028
Alignment:
Q  18 catacaaaactcatgagaaaaacccagaattgattcacatgaatgttattcaaaccgtaactttattttactcccaagttcttttaattgttgtgaaagg 117  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  39991709 cataaaaaactcatgagaaaagcccagaattgattcacatgaatgttattcaaactgtaactttattttactcccaagttcttttaattgttgtgaaagg 39991808  T
Q  118 gttaattcaaattcaaaccctctcttcccctttcatctcatcnnnnnnnnctttctccaatctgatacccattcctctatttcactctctgccaaacaca 217  Q
    ||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39991809 gttaattcaaattcaaaccctctcttcccctttcatctcatctttttt--ctttctccaatctgatacccattcctctatttcactctctgccaaacaca 39991906  T
Q  218 aaattacaatcatttcttttcaaacacaatcccagaaaacaacataaacaattttcttcttggagcaatttttattgtatcttgatttttgtttcaaatg 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||    
T  39991907 aaattacaatcatttcttttcaaacacaatcccagaaaacaacataaacaattttcttcttggagcaatttttattgtatctggatttttgtttcagatg 39992006  T
Q  318 tttgttcatatggaacaatact 339  Q
    ||||||||||||||||||||||    
T  39992007 tttgttcatatggaacaatact 39992028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 174 - 214
Target Start/End: Complemental strand, 21816685 - 21816645
Alignment:
Q  174 ccaatctgatacccattcctctatttcactctctgccaaac 214  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  21816685 ccaatctgatacccattcctctatttcactctctgcgaaac 21816645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 18 - 359
Target Start/End: Original strand, 13809623 - 13809966
Alignment:
Q  18 catacaaaactcatgagaaaaacccagaattgattcacatgaatgttattcaaaccgtaactttattttactcccaagttcttttaattgttgtgaaagg 117  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||    
T  13809623 cataaaaaactcatgagaaaaacccagaattgattcacatgaatgttattcaaaccctaactttattt-actcccaaattcttttaattgttgtgaaagg 13809721  T
Q  118 gttaattcaaattcaaaccctctcttcccctttcatctcatcnnnnnnnn--ctttctccaatctgatacccattcctctatttcactctctgccaaaca 215  Q
    |||||||||||||||||||||||||||||||||||| |||||          ||||||||||||||||||||||||||||||||||||||||||||||||    
T  13809722 gttaattcaaattcaaaccctctcttcccctttcatttcatcttttttttttctttctccaatctgatacccattcctctatttcactctctgccaaaca 13809821  T
Q  216 caaaattacaatcat-ttcttttcaaacacaatcccagaaaacaacataaacaattttcttcttggagcaatttttattgtatcttgatttttgtttcaa 314  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||||||||     
T  13809822 caaaattacaatcatcttcttttcaaacacaatcccagaaaacaacataaacaattttcttcttagggcaatttttattgtatctggatttttgtttcag 13809921  T
Q  315 atgtttgttcatatggaacaatacttcaacatgttcatctcactc 359  Q
    |||||||||||||||| |||||||||||||||||| | |||||||    
T  13809922 atgtttgttcatatgggacaatacttcaacatgttaacctcactc 13809966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 51 - 359
Target Start/End: Complemental strand, 7191002 - 7190697
Alignment:
Q  51 ttcacatgaatgttattcaaaccgtaactttattttactcccaagttcttttaattgttgtgaaagggttaattcaaattcaaaccctctcttccccttt 150  Q
    ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||| |||    
T  7191002 ttcacatgaatgttattcaaaccctaactttattttactcccaaattcttttaattgttgtgaaagggttaactcaaattcaaactctctcttccc-ttt 7190904  T
Q  151 catctcatcnnnnnnnnctttctccaatctgatacccat--tcctctatttcactctctgccaaacacaaaattacaatcat-ttcttttcaaacacaat 247  Q
    | ||||||          || ||||||||||||| ||||  |||||||||||||||||| |||||||||||||||  ||||| ||| |||||||||||||    
T  7190903 cttctcatttttt-----ttgctccaatctgatatccatattcctctatttcactctctaccaaacacaaaattatcatcatcttcgtttcaaacacaat 7190809  T
Q  248 cccagaaaacaacataaacaattttcttcttggagcaatttttattgtatcttgatttttgtttcaaatgtttgttcatatggaacaatacttcaacatg 347  Q
    ||||||||||||||||||||||||||||||||  |||||||||| |||||||  |||||||||||| ||||||||||||| || ||||||||||||||||    
T  7190808 cccagaaaacaacataaacaattttcttcttgcggcaatttttactgtatctgaatttttgtttcagatgtttgttcataagggacaatacttcaacatg 7190709  T
Q  348 ttcatctcactc 359  Q
    ||||||||||||    
T  7190708 ttcatctcactc 7190697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 18 - 359
Target Start/End: Complemental strand, 14817705 - 14817364
Alignment:
Q  18 catacaaaactcatgagaaaaacccagaattgattcacatgaatgttattcaaaccgtaactttattttactcccaagttcttttaattgttgtgaaagg 117  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||| ||||||||||||||||||||||    
T  14817705 cataaaaaactcatgagaaaaacccagaattgattcacatgaatgttattcaaaccctaa-tttattttactctcaaattcttttaattgttgtgaaagg 14817607  T
Q  118 gttaattcaaattcaaaccctctcttcccctttcatctcatcnnnnnnnnctttctccaatctgatacccattcctctatttcactctctgccaaacaca 217  Q
    |||||||||||||||||||||||||||||||||||| |||||        ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14817606 gttaattcaaattcaaaccctctcttcccctttcatttcatcttttttttctttctccaatctgatacccattcctctatttcactctctgccaaacaca 14817507  T
Q  218 aaattacaatcat-ttcttttcaaacacaatcccagaaaacaacataaacaattttcttcttggagcaatttttattgtatcttgatttttgtttcaaat 316  Q
    ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||||  |||||||||| | ||    
T  14817506 aaattacaatcatcttcttttcaaacataatcccagaaaacaacataaacaattttcttcttggggaaatttttattgtatctgaatttttgtttaagat 14817407  T
Q  317 gtttgttcatatggaacaatacttcaacatgttcatctcactc 359  Q
    |||||||||||||| |||||||||||||||||||| |||||||    
T  14817406 gtttgttcatatgggacaatacttcaacatgttcacctcactc 14817364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 18 - 359
Target Start/End: Original strand, 14828034 - 14828375
Alignment:
Q  18 catacaaaactcatgagaaaaacccagaattgattcacatgaatgttattcaaaccgtaactttattttactcccaagttcttttaattgttgtgaaagg 117  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||| ||||||||||||||||||||||    
T  14828034 cataaaaaactcatgagaaaaacccagaattgattcacatgaatgttattcaaaccctaa-tttattttactctcaaattcttttaattgttgtgaaagg 14828132  T
Q  118 gttaattcaaattcaaaccctctcttcccctttcatctcatcnnnnnnnnctttctccaatctgatacccattcctctatttcactctctgccaaacaca 217  Q
    |||||||||||||||||||||||||||||||||||| |||||        ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14828133 gttaattcaaattcaaaccctctcttcccctttcatttcatcttttttttctttctccaatctgatacccattcctctatttcactctctgccaaacaca 14828232  T
Q  218 aaattacaatcat-ttcttttcaaacacaatcccagaaaacaacataaacaattttcttcttggagcaatttttattgtatcttgatttttgtttcaaat 316  Q
    ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||||  |||||||||| | ||    
T  14828233 aaattacaatcatcttcttttcaaacataatcccagaaaacaacataaacaattttcttcttggggaaatttttattgtatctgaatttttgtttaagat 14828332  T
Q  317 gtttgttcatatggaacaatacttcaacatgttcatctcactc 359  Q
    |||||||||||||| |||||||||||||||||||| |||||||    
T  14828333 gtttgttcatatgggacaatacttcaacatgttcacctcactc 14828375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 18 - 359
Target Start/End: Complemental strand, 9312035 - 9311695
Alignment:
Q  18 catacaaaactcatgagaaaaacccagaattgattcacatgaatgttattcaaaccgtaactttattttactcccaagttcttttaattgttgtgaaagg 117  Q
    |||| ||||||||||||||||||| |||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  9312035 cataaaaaactcatgagaaaaacctagaattcattcacatgaatgttattcaaaccctaactttattttactcccaaattcttttaattgttgtgaaagg 9311936  T
Q  118 gttaattcaaattcaaaccctctcttcccctttcatctcatcnnnnnnnnctttctccaatctgatacccattcctctatttcactctctgccaaacaca 217  Q
    ||||||||||||||||||||||||||||||||||||||||||         |||||||| |||||||| |||||||||||||||||||||||||||||||    
T  9311935 gttaattcaaattcaaaccctctcttcccctttcatctcatcttttttt--tttctccattctgatactcattcctctatttcactctctgccaaacaca 9311838  T
Q  218 aaattacaatcat-ttcttttcaaacacaatcccagaaaacaacataaacaattttcttcttggagcaatttttattgtatcttgatttttgtttcaaat 316  Q
    ||||||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| ||    
T  9311837 aaattacaatcaccttcttttcaaacacaatcccaaaaaacaacataaacaattttcttcttggggcaatttttattgtatctggatttttgtttcagat 9311738  T
Q  317 gtttgttcatatggaacaatacttcaacatgttcatctcactc 359  Q
    |||||||||||||| | |||||||||||||||||| |||||||    
T  9311737 gtttgttcatatgggataatacttcaacatgttcacctcactc 9311695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 18 - 359
Target Start/End: Complemental strand, 11039591 - 11039251
Alignment:
Q  18 catacaaaactcatgagaaaaacccagaattgattcacatgaatgttattcaaaccgtaactttattttactcccaagttcttttaattgttgtgaaagg 117  Q
    |||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||    
T  11039591 cataaaaaactcatgagaaaatcccagaattgattcacatgaatgttattcaaaccctaactttattttactcccaaattgttttaattgttgtgaaagg 11039492  T
Q  118 gttaattcaaattcaaaccctctcttcccctttcatctcatcnnnnnnnnctttctccaatctgatacccattcctctatttcactctctgccaaacaca 217  Q
    ||||||||||||||||||||||||||| ||||||||||||||         |||||||||||| |||| |||||||||||||||||||||||||||||||    
T  11039491 gttaattcaaattcaaaccctctcttctcctttcatctcatcttttttt--tttctccaatctaatactcattcctctatttcactctctgccaaacaca 11039394  T
Q  218 aaattacaatcat-ttcttttcaaacacaatcccagaaaacaacataaacaattttcttcttggagcaatttttattgtatcttgatttttgtttcaaat 316  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||| | ||||||||||||| ||    
T  11039393 aaattacaatcatcttcttttcaaacacaatcccaaaaaacaacataaataattttcttcttggggcaatttttattgtatatggatttttgtttcagat 11039294  T
Q  317 gtttgttcatatggaacaatacttcaacatgttcatctcactc 359  Q
    |||||||||||||| |||||||||||||||||||| |||||||    
T  11039293 gtttgttcatatggcacaatacttcaacatgttcacctcactc 11039251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 23 - 359
Target Start/End: Original strand, 46014906 - 46015241
Alignment:
Q  23 aaaactcatgagaaaaacccagaattgattcacatgaatgttattcaaaccgtaactttattttactcccaagttcttttaattgttgtgaaagggttaa 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||| |    
T  46014906 aaaactcatgagaaaaacccagaattgattcacatgaatgttattcaaaccctaactttattttacttccaaattcttttaattgttgtgaaagggttga 46015005  T
Q  123 ttcaaattcaaaccctctcttcccctttcatctcatcnnnnnnnnctttctccaatctgatacccattcctctatttcactctctgccaaacacaaaatt 222  Q
    ||||||||||||| |||||||||||||||||||||||         ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  46015006 ttcaaattcaaactctctcttcccctttcatctcatctttttt---tttctccaatctgatacccattcctatatttcactctctgccaaacacaaaatt 46015102  T
Q  223 acaatcat-ttcttttcaaacacaatcccagaaaa-caacataaacaattttcttcttggagcaatttttattgtatcttgatttttgtttcaaatgttt 320  Q
    |||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||    
T  46015103 acaatcatcttcttttcaaacacaatccctgaaaaacaacataaacaattttcttcttggggcaatttttattgtatctggatttttgtttcagatgttt 46015202  T
Q  321 gttcatatggaacaatacttcaacatgttcatctcactc 359  Q
    |||||||||| |||||||||||||||||| | |||||||    
T  46015203 gttcatatgggacaatacttcaacatgttaacctcactc 46015241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 23 - 359
Target Start/End: Complemental strand, 2939650 - 2939316
Alignment:
Q  23 aaaactcatgagaaaaacccagaattgattcacatgaatgttattcaaaccgtaactttattttactcccaagttcttttaattgttgtgaaagggttaa 122  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||    
T  2939650 aaaactcatgagaaaaatccagaattgactcacatgaatgttattcaaacc-taactttattttactcccaaattcttttaattgttgtgaaatggttaa 2939552  T
Q  123 ttcaaattcaaaccctctcttcccctttcatctcatcnnnnnnnnctttctccaatctgatacccat--tcctctatttcactctctgccaaacacaaaa 220  Q
     |||||||||||||||||||||||||||| ||||||          |  ||||||||||||||| ||  |||||||||||||||| | ||||||||||||    
T  2939551 ctcaaattcaaaccctctcttcccctttcttctcattttttt----tggctccaatctgatacctatattcctctatttcactctataccaaacacaaaa 2939456  T
Q  221 ttacaatcat-ttcttttcaaacacaatcccagaaaacaacataaacaattttcttcttggagcaatttttattgtatcttgatttttgtttcaaatgtt 319  Q
    |||  ||||| ||| ||| |||||||| ||||||||||||||||||||||||||||||||  |||||||| | ||||||| ||||||||||||| |||||    
T  2939455 ttatcatcatcttcgttttaaacacaaacccagaaaacaacataaacaattttcttcttgtggcaattttgactgtatctggatttttgtttcagatgtt 2939356  T
Q  320 tgttcatatggaacaatacttcaacatgttcatctcactc 359  Q
    |||||||| || |||||||||||||||||||| |||||||    
T  2939355 tgttcataagggacaatacttcaacatgttcacctcactc 2939316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 23 - 359
Target Start/End: Original strand, 33332385 - 33332725
Alignment:
Q  23 aaaactcatgagaaaaacccagaattgattcacatgaatgttattcaaaccgtaactttattttactcccaagttcttttaattgttgtgaaagggttaa 122  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||| ||| || ||| |||||||||||||||||||||||    
T  33332385 aaaactcatgagaaaaatccagaattgactcacatgaatgttattcaaaccctaactttattttaatcctaaattcatttaattgttgtgaaagggttaa 33332484  T
Q  123 ttcaaattcaaaccctctcttcccctttcatctcatcnnnnnnnncttt--ctccaatctgatacccat--tcctctatttcactctctgccaaacacaa 218  Q
     |||||||||||||||||||||||||||  |||| |          |||  ||||||||| |||| |||  |||||||||||||||||||||||||||||    
T  33332485 ctcaaattcaaaccctctcttcccctttt-tctcttttttttttttttttgctccaatctaatactcatattcctctatttcactctctgccaaacacaa 33332583  T
Q  219 aattacaatcat-ttcttttcaaacacaatcccagaaaacaacataaacaattttcttcttggagcaatttttattgtatcttgatttttgtttcaaatg 317  Q
    |||||  ||||| ||| | ||||||||||||| ||||||||||||||||||||| ||| |||  |||||||||| ||||||| ||||||||||||| |||    
T  33332584 aattatcatcatcttcgtgtcaaacacaatcctagaaaacaacataaacaatttccttgttgtggcaatttttactgtatctggatttttgtttcagatg 33332683  T
Q  318 tttgttcatatggaacaatacttcaacatgttcatctcactc 359  Q
    |||||||| | || |||||||||||||||||||| |||||||    
T  33332684 tttgttcacaagggacaatacttcaacatgttcacctcactc 33332725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 180; Significance: 4e-97; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 18 - 359
Target Start/End: Complemental strand, 19718746 - 19718399
Alignment:
Q  18 catacaaaactcatgagaaaaacccagaattgattcacatgaatgttattcaaaccgtaactttattttac-tccca------agttcttttaattgttg 110  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |  |||    || | || ||      | || ||||||||||||    
T  19718746 cataaaaaactcatgagaaaaacccataattgattcacatgaatgttattcaaaccctctcttcccctttcatctcatcttttaattgttttaattgttg 19718647  T
Q  111 tgaaagggttaattcaaattcaaaccctctcttcccctttcatctcatcnnnnnnnnctttctccaatctgatacccattcctctatttcactctctgcc 210  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||          || |||||||||||||| ||||||||||||||||||||||||    
T  19718646 tgaaagggttaattcaagttcaaaccctctcttcccctttcatctcatttttttt---ttcctccaatctgatactcattcctctatttcactctctgcc 19718550  T
Q  211 aaacacaaaattacaatcat-ttcttttcaaacacaatcccagaaaacaacataaacaattttcttcttggagcaatttttattgtatcttgatttttgt 309  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  19718549 aaacacaaaattacaatcatcttcttttcaaacacaatcccaaaaaacaacataaacaattttcttcttggaacaatttttattgtatctggatttttgt 19718450  T
Q  310 ttcaaatgtttgttcatat-ggaacaatacttcaacatgttcatctcactc 359  Q
    |||| |||||||||||||| || |||||||||||||||||||| |||||||    
T  19718449 ttcagatgtttgttcatatggggacaatacttcaacatgttcacctcactc 19718399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 113
Target Start/End: Complemental strand, 37967514 - 37967468
Alignment:
Q  67 tcaaaccgtaactttattttactcccaagttcttttaattgttgtga 113  Q
    ||||||| |||||||||||||||||| | ||||||||||||||||||    
T  37967514 tcaaaccctaactttattttactcccgaattcttttaattgttgtga 37967468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 179; Significance: 2e-96; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 18 - 359
Target Start/End: Original strand, 70876 - 71215
Alignment:
Q  18 catacaaaactcatgagaaaaacccagaattgattcacatgaatgttattcaaaccgtaactttattttactcccaagttcttttaattgttgtgaaagg 117  Q
    |||| ||||||||||||||||| | |||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |    
T  70876 cataaaaaactcatgagaaaaatctagaattgactcacatgaatgttattcaaaccctaactttattttactcccaaattcttttaattgttgtgaaatg 70975  T
Q  118 gttaattcaaattcaaaccctctcttcccctttcatctcatcnnnnnnnnctttctccaatctgatacccat--tcctctatttcactctctgccaaaca 215  Q
    ||||| ||||||||||||| |||||||||||||| |||| |           | ||||||| ||||||||||  ||||||||||||||||||||||||||    
T  70976 gttaactcaaattcaaaccatctcttcccctttcttctcttttttta-----tgctccaatttgatacccatattcctctatttcactctctgccaaaca 71070  T
Q  216 caaaattacaatcat-ttcttttcaaacacaatcccagaaaacaacataaacaattttcttcttggagcaatttttattgtatcttgatttttgtttcaa 314  Q
    ||||||||  ||||| ||| ||||||||||||||| ||||||||||||||||||| |||||||||  |||||||||| ||||||| || ||||||||||     
T  71071 caaaattatcatcatcttcgtttcaaacacaatcctagaaaacaacataaacaatattcttcttgtggcaatttttactgtatctagacttttgtttcag 71170  T
Q  315 atgtttgttcatatggaacaatacttcaacatgttcatctcactc 359  Q
    ||||||||||||| || |||||||||||||||||||| |||||||    
T  71171 atgtttgttcataagggacaatacttcaacatgttcacctcactc 71215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 175; Significance: 4e-94; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 18 - 359
Target Start/End: Original strand, 17970991 - 17971327
Alignment:
Q  18 catacaaaactcatgagaaaaacccagaattgattcacatgaatgttattcaaaccgtaactttattttactcccaagttcttttaattgttgtgaaagg 117  Q
    |||| |||||||||||||||| |||||||||||||||||| || |||||||||||| ||||||| |||||||||||| ||||||||||| ||||||||||    
T  17970991 cataaaaaactcatgagaaaa-cccagaattgattcacatcaa-gttattcaaaccctaactttgttttactcccaaattcttttaatttttgtgaaagg 17971088  T
Q  118 gttaattcaaattcaaaccctctcttcccctttcatctcatcnnnnnnnnctttctccaatctgatacccattcctctatttcactctctgccaaacaca 217  Q
    |||||  ||||||||||||||||||||||||||  ||||||          |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  17971089 gttaacccaaattcaaaccctctcttcccctttgttctcattttttt----tttctccaatctgatacccattcctctatttcaccctctgccaaacaca 17971184  T
Q  218 aaattacaatcat-ttcttttcaaacacaatcccagaaaacaacataaacaattttcttcttggagcaatttttattgtatcttgatttttgtttcaaat 316  Q
    ||||||  ||||| ||| ||| ||| | |||||||||||||||||||||| ||||||||||||  |||||||||| ||||||| ||||||||||||| ||    
T  17971185 aaattatcatcatcttcgtttaaaaaaaaatcccagaaaacaacataaacgattttcttcttgtggcaatttttactgtatctggatttttgtttcagat 17971284  T
Q  317 gtttgttcatatggaacaatacttcaacatgttcatctcactc 359  Q
    ||||||||||| || ||||||||| |||||||||| |||||||    
T  17971285 gtttgttcataagggacaatactttaacatgttcacctcactc 17971327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 23 - 359
Target Start/End: Complemental strand, 45088103 - 45087769
Alignment:
Q  23 aaaactcatgagaaaaacccagaattgattcacatgaatgttattcaaaccgtaactttattttactcccaagttcttttaattgttgtgaaagggttaa 122  Q
    |||||||||||||||||  ||||||||| |||||||||||||||||||||| |||||||||||| ||||||| ||| |||||||||||||||||||||||    
T  45088103 aaaactcatgagaaaaattcagaattgactcacatgaatgttattcaaaccctaactttatttttctcccaaattcatttaattgttgtgaaagggttaa 45088004  T
Q  123 ttcaaattcaaaccctctcttcccctttcatctcatcnnnnnnnnctttctccaatctgatacccat--tcctctatttcactctctgccaaacacaaaa 220  Q
     |||||| ||||||||||||||||||||  ||||||          || ||||||||| ||||||||  |||||||||||||||| ||||||||||||||    
T  45088003 ctcaaatccaaaccctctcttcccctttt-tctcattttttt----ttgctccaatctaatacccatattcctctatttcactctttgccaaacacaaaa 45087909  T
Q  221 ttacaatcat-ttcttttcaaacacaatcccagaaaacaacataaacaattttcttcttggagcaatttttattgtatcttgatttttgtttcaaatgtt 319  Q
    |||  ||||| ||| ||||||||||||||||||||||||||||||||||||| ||| |||  |||||||||| ||||||| ||||||||||||| |||||    
T  45087908 ttatcatcatcttcgtttcaaacacaatcccagaaaacaacataaacaatttccttgttgtggcaatttttactgtatctggatttttgtttcagatgtt 45087809  T
Q  320 tgttcatatggaacaatacttcaacatgttcatctcactc 359  Q
    |||||| | || |||||||||||||||||||| |||||||    
T  45087808 tgttcacaagggacaatacttcaacatgttcacctcactc 45087769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University