View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3361_high_6 (Length: 360)
Name: NF3361_high_6
Description: NF3361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3361_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 312; Significance: 1e-176; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 16 - 339
Target Start/End: Original strand, 25356921 - 25357244
Alignment:
| Q |
16 |
atccaagagaggtgttacataaagtccattattaagtaactaataagaattgaaataaaatgaagatatgaagactcacataagatggtaaagggttagg |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25356921 |
atccaagagaggtgttacataaagtccattattaagtaactaataagaattgaaataaaatgaagatatgaagactcacataagatggtaaagggttagg |
25357020 |
T |
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| Q |
116 |
gtcagcagttgttggtacaaggttcactacagaaatcggctccacaaacgtgtttttagccgacatatttccatcagcagacactttttcattctggttg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25357021 |
gtcagcagttgttggtacaaggttcactacagaaatcggctccacaaacgtgtttttagccgacatatttccatcagcagacactttttcattctggttg |
25357120 |
T |
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| Q |
216 |
agaggctctccatcaacaagcacttctggttgttgttgctctaattctttggtaatcttataacatgcatcgcgtctttttgtttttctctttgctgatt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
25357121 |
agaggctctccatcaacaagcacttctggttgttgttgatctaattctttggtaatcttataacatgcatcgcgtctttttgtttttctctttgctgctt |
25357220 |
T |
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| Q |
316 |
catttggtttaacattgcttagag |
339 |
Q |
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| T |
25357221 |
cgtttggtttaacattgcttagag |
25357244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 13 - 339
Target Start/End: Original strand, 25352249 - 25352582
Alignment:
| Q |
13 |
aatatccaagagaggtgttacataaagtccattattaagtaactaa-taagaattgaaataaaatgaagatatgaagactcacataagatggtaaagg-- |
109 |
Q |
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| T |
25352249 |
aatatccaagagatgtgttacagaaagtacattatatattaagtaactaagaattgaaataaaatgaagatatgaagactcacataagatggtacaggcg |
25352348 |
T |
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| Q |
110 |
-gttagggtcagcagttgttggtacaaggttcactacagaaatcggctccacaaacgtgtttttagccgacatatttccatcagcagacactttttcatt |
208 |
Q |
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| T |
25352349 |
ggttagggtcagcagcacttggtacatggtacatagcagaaattggctccacaaatgtgtttttcgccaacatatcgtcatcggcagatacttcttgatt |
25352448 |
T |
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| Q |
209 |
ctggttgagaggctctccatcaacaagcacttctggttgttgttgctctaattctttggtaatcttataacatgcatcgcg---tctttttgtttttctc |
305 |
Q |
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| T |
25352449 |
atggttgagaggctctccatcaacaagcacttctggttgttgttgctctaattcttctgtcttcttataacatgcatcgcgtcttctttttgtttttctc |
25352548 |
T |
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| Q |
306 |
tttgctgattcatttggtttaacattgcttagag |
339 |
Q |
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||||||| |||||||||||||||||||||||||| |
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| T |
25352549 |
tttgctgcttcatttggtttaacattgcttagag |
25352582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 13 - 150
Target Start/End: Original strand, 25349713 - 25349846
Alignment:
| Q |
13 |
aatatccaagagaggtgttacataaagtccattattaagtaactaataagaattgaaataaaatgaagatatgaagactcacataagatggtaaagggtt |
112 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25349713 |
aatatccaagaaaggtgttacataaagtccattattaagtaactaataagaattgaaataaaatgaagatatgaagactcacataagatggtaaagggt- |
25349811 |
T |
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| Q |
113 |
agggtcagcagttgttggtacaaggttcactacagaaa |
150 |
Q |
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|||||||| ||||||||||||| || |||||||||| |
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| T |
25349812 |
-gggtcagc--ttgttggtacaagatttactacagaaa |
25349846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 81
Target Start/End: Original strand, 25361584 - 25361649
Alignment:
| Q |
13 |
aatatccaagagaggtgttacataaagtccattattaagtaactaataagaattgaaataaaatgaaga |
81 |
Q |
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||||||||| |||| |||||||||||||| |||||| |||||| || |||||||||||||||||||| |
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| T |
25361584 |
aatatccaatagagatgttacataaagtctattattgagtaac---tacgaattgaaataaaatgaaga |
25361649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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