View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3361_high_9 (Length: 322)
Name: NF3361_high_9
Description: NF3361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3361_high_9 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 17 - 322
Target Start/End: Complemental strand, 47253792 - 47253487
Alignment:
| Q |
17 |
agtaaggactgttaatattgttaatttcaatatctaaagcctaattgaaatgaagttaattggattaattgtgtttatgtgcaattactgtgtttcaggg |
116 |
Q |
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| T |
47253792 |
agtaaggactgttaatattgttaatttcaatatctaaagcctaattgaaatgaagttaattggattaattgtgtttatgtgcaattactgtgtttcaggg |
47253693 |
T |
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| Q |
117 |
aatatattgggcctgctactgaggatctaaaggtaaatcgaacagttcattaatacatgtttattgaacagttcattaatatatcagattatgtttactg |
216 |
Q |
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| T |
47253692 |
aatatattgggcctgctactgaggatctaaaggtaaatcgaacagttcattaatacatgtttattgaacagttcattaatatatcagattatgtttactg |
47253593 |
T |
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| Q |
217 |
atttgttgttttgaattttcaattttcagacttcaaaattacaaatggaatttctgtgtaactatcttgctgagctaagcttgatagattatgaatgtat |
316 |
Q |
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| T |
47253592 |
atttgttgttttgaattttcaattttcagacttcaaaattacaaatggaatttctgtgtaactatcttgctgagctaagcttgatagactatgaatgtat |
47253493 |
T |
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| Q |
317 |
aagatt |
322 |
Q |
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| T |
47253492 |
aagatt |
47253487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 32 - 94
Target Start/End: Complemental strand, 47242514 - 47242452
Alignment:
| Q |
32 |
tattgttaatttcaatatctaaagcctaattgaaatgaagttaattggattaattgtgtttat |
94 |
Q |
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| T |
47242514 |
tattgtgaatttgaatatctaaagccttgttgaaatgaagttaattggactaattctgtttat |
47242452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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