View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3361_low_12 (Length: 274)
Name: NF3361_low_12
Description: NF3361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3361_low_12 |
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| [»] scaffold0041 (1 HSPs) |
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| [»] scaffold0127 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 21 - 262
Target Start/End: Complemental strand, 46767466 - 46767225
Alignment:
| Q |
21 |
tgtttccctcatttgctatcattgagcaggagggaatagtatatctcttatagtctccattgcctctcttactcgttaatgtttatttgtaaaatatggg |
120 |
Q |
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| T |
46767466 |
tgtttccctcatttgctatcattgagcaggagggaatagtatatctcttatagtctccattgcctctcttactcgttaatgtttatttgtaaaatatggg |
46767367 |
T |
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| Q |
121 |
ctaattcctttgagctctctttgtatttgatttgtggttttagccgttttatcggttataccacctttatctattagaatctcatctctttcgatagaat |
220 |
Q |
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| T |
46767366 |
ctaattcctttgagctctctttgtatttgatttgtggttttagccgttttatcggttataccacctttatctattagaatctcatctctttcaatagaat |
46767267 |
T |
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| Q |
221 |
gtcttcttcagttttgaagtttaaaatcttgaaattcttctc |
262 |
Q |
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| T |
46767266 |
gtcttcttcagttttgaagtttaaaatcttgaaattcttctc |
46767225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 144 - 214
Target Start/End: Original strand, 4670443 - 4670513
Alignment:
| Q |
144 |
tatttgatttgtggttttagccgttttatcggttataccacctttatctattagaatctcatctctttcga |
214 |
Q |
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| T |
4670443 |
tatttgatttgtggttttagccgttttattggttataccgcctttatatattggaatctcatctcgttcga |
4670513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 108 - 181
Target Start/End: Complemental strand, 29808183 - 29808110
Alignment:
| Q |
108 |
tgtaaaatatgggctaattcctttgagctctctttgtatttgatttgtggttttagccgttttatcggttatac |
181 |
Q |
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| T |
29808183 |
tgtaaaatatgggcttatccctctgagcttcgtttgtacttgatttgtggttttaaccgttttgtcggttatac |
29808110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 147 - 214
Target Start/End: Complemental strand, 83964 - 83897
Alignment:
| Q |
147 |
ttgatttgtggttttagccgttttatcggttataccacctttatctattagaatctcatctctttcga |
214 |
Q |
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| T |
83964 |
ttgatttgtggttttaaccgttttgtcgattataccgcctttatctattggaatctcatctcgttcga |
83897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 147 - 214
Target Start/End: Original strand, 40882319 - 40882386
Alignment:
| Q |
147 |
ttgatttgtggttttagccgttttatcggttataccacctttatctattagaatctcatctctttcga |
214 |
Q |
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| T |
40882319 |
ttgatttgtggttttaaccgttttgtcgattataccgcctttatctattggaatctcatctcgttcga |
40882386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 108 - 162
Target Start/End: Complemental strand, 18605212 - 18605158
Alignment:
| Q |
108 |
tgtaaaatatgggctaattcctttgagctctctttgtatttgatttgtggtttta |
162 |
Q |
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| T |
18605212 |
tgtaaaacatgggctaatccctttgagctctttttgtacttgatttgtggtttta |
18605158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0127 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0127
Description:
Target: scaffold0127; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 147 - 207
Target Start/End: Original strand, 14603 - 14663
Alignment:
| Q |
147 |
ttgatttgtggttttagccgttttatcggttataccacctttatctattagaatctcatct |
207 |
Q |
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| T |
14603 |
ttgatttgtggttttagccgttctgtcgattataccgtctttatttattagaatctcatct |
14663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 182
Target Start/End: Complemental strand, 48601376 - 48601334
Alignment:
| Q |
140 |
tttgtatttgatttgtggttttagccgttttatcggttatacc |
182 |
Q |
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| T |
48601376 |
tttgtatttgatttgtggttttaaccgttttattggttatacc |
48601334 |
T |
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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 211
Target Start/End: Complemental strand, 34492663 - 34492603
Alignment:
| Q |
151 |
tttgtggttttagccgttttatcggttataccacctttatctattagaatctcatctcttt |
211 |
Q |
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| T |
34492663 |
tttgtggttttaacagttttgtaagttataccacctttttctattggaatctcatctcttt |
34492603 |
T |
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