View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3361_low_13 (Length: 267)
Name: NF3361_low_13
Description: NF3361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3361_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 42 - 246
Target Start/End: Complemental strand, 9516380 - 9516176
Alignment:
| Q |
42 |
cataggtcaaatatatgttgagaaatgagcacatttatttcagtgctagacaattcctcgaagagttggattacatgtgtgtgttaagggaaagacgtga |
141 |
Q |
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| T |
9516380 |
cataggtcaaatatatgttgagaaatgagcacatttagttcagtgctagacaattcctcgaagagttggattacatgtgtgtgttaagggaaagacgtga |
9516281 |
T |
|
| Q |
142 |
aaaatagaataaaaaatttaaagaataattgtagaaaccattaagagaacatgtaaaacgttttaaagaagatcaagattctttatcctaaaatattgtg |
241 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
9516280 |
aaaatagaataaaaaatttaaagaataattgtagaaacctttaagagaacatgtaaaacgttttatcgaagatcaagattctttatcctaaaatattgtg |
9516181 |
T |
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| Q |
242 |
atatg |
246 |
Q |
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||||| |
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| T |
9516180 |
atatg |
9516176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 42 - 166
Target Start/End: Original strand, 40819208 - 40819332
Alignment:
| Q |
42 |
cataggtcaaatatatgttgagaaatgagcacatttatttcagtgctagacaattcctcgaagagttggattacatgtgtgtgttaagggaaagacgtga |
141 |
Q |
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||||| ||||||||||||| ||||| ||||| ||||| || |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
40819208 |
catagttcaaatatatgttaagaaaggagcatatttagtttagtgctagacaatttctcgaagagttggattacatgtgtgtgttcagggaaagacgtga |
40819307 |
T |
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| Q |
142 |
aaaatagaataaaaaatttaaagaa |
166 |
Q |
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| T |
40819308 |
aaaatagaataaaaaatttaaagaa |
40819332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 203 - 246
Target Start/End: Original strand, 40819324 - 40819367
Alignment:
| Q |
203 |
tttaaagaagatcaagattctttatcctaaaatattgtgatatg |
246 |
Q |
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| T |
40819324 |
tttaaagaagatcaagattcttaatcctaaaatcttgtgatatg |
40819367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 102 - 159
Target Start/End: Original strand, 5121213 - 5121270
Alignment:
| Q |
102 |
aagagttggattacatgtgtgtgttaagggaaagacgtgaaaaatagaataaaaaatt |
159 |
Q |
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||||||| ||||||||||||| |||||| |||||| |||||||||||||||||||||| |
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| T |
5121213 |
aagagtttgattacatgtgtgggttaagtgaaagatgtgaaaaatagaataaaaaatt |
5121270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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