View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3361_low_17 (Length: 248)
Name: NF3361_low_17
Description: NF3361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3361_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 142; Significance: 1e-74; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 93 - 234
Target Start/End: Complemental strand, 24984731 - 24984590
Alignment:
| Q |
93 |
taattagaaactatatgataacataattgtaaataactatatatagatatagatgtgaatttgtgtttacctctcctttccaaccactgagatcagtgtg |
192 |
Q |
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| T |
24984731 |
taattagaaactatatgataacataattgtaaataactatatatagatatagatgtgaatttgtgtttacctctcctttccaaccactgagatcagtgtg |
24984632 |
T |
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| Q |
193 |
acaaatggaagtatataggatcttgattctaacctccatttt |
234 |
Q |
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| T |
24984631 |
acaaatggaagtatataggatcttgattctaacctccatttt |
24984590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 153 - 234
Target Start/End: Complemental strand, 24992880 - 24992799
Alignment:
| Q |
153 |
ttgtgtttacctctcctttccaaccactgagatcagtgtgacaaatggaagtatataggatcttgattctaacctccatttt |
234 |
Q |
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| T |
24992880 |
ttgtgattacctcgcctttccaaccactgagatcagtgtgacaaatggaagtatataggatcttgattctaacctccatttt |
24992799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 24984823 - 24984767
Alignment:
| Q |
1 |
catggccaaaaatccgaggataagcacgttgaggctcacactttgattgatgaaggt |
57 |
Q |
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| T |
24984823 |
catggccaaaaatccgaggataagcacgttgaggctcacactttgattgatgaaggt |
24984767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 24992994 - 24992945
Alignment:
| Q |
1 |
catggccaaaaatccgaggataagcacgttgaggctcacactttgattga |
50 |
Q |
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| T |
24992994 |
catggccaaaaatccgaggaaaagcacgttgaggttcagactttgattga |
24992945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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