View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3361_low_20 (Length: 242)
Name: NF3361_low_20
Description: NF3361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3361_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 15029489 - 15029264
Alignment:
| Q |
1 |
gaatggctttgcacttattctgatagacagaacaagttctctcataattatgcacatggccgaaaagaaccaagtcaacctgtttcatgttcacaatgta |
100 |
Q |
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| T |
15029489 |
gaatggctttgcacttattctgatagacagaacaagttctctcataattatgcacatggccgaaaagaaccaagtcaacctgtttcatgttcacaatgta |
15029390 |
T |
|
| Q |
101 |
cataagttagcttcttatacaaggaactgtaagtaaccgagttctgaggagcgatgttcttgccttattctgtaacagcaatggctccacagcattaata |
200 |
Q |
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| T |
15029389 |
cataagttagcttcttatacaaggaactgtaagtaaccgagttctaaggagtgatgttcttgccttattctgtaacagcaatggctccacagcgttaata |
15029290 |
T |
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| Q |
201 |
aatttctgatctttagatgaaaatcc |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
15029289 |
aatttctgatctttagatgaaaatcc |
15029264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 3 - 212
Target Start/End: Complemental strand, 21368864 - 21368657
Alignment:
| Q |
3 |
atggctttgcacttattctgatagacagaacaagttctctcataattatgcacatggccgaaaagaaccaagtcaacctgtttcatgttcacaatgtaca |
102 |
Q |
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| T |
21368864 |
atggctttgcatttcttctgataaacggaacaagttctctcatagttatgaacatggccgaaaagaaccaagtcaacctgtttcatgtt-tcaa--taca |
21368768 |
T |
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| Q |
103 |
taagttagcttcttatacaaggaactgtaagtaaccgagttctgaggagc--gatgttcttgccttattctgtaacagcaatggctccacagcattaata |
200 |
Q |
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| T |
21368767 |
caagttagctacttatacaaggaactgtaagtaactaagttc-aacgagcttgatgttcttgccttattctcaaacaacaacggctccacagcttcaaca |
21368669 |
T |
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| Q |
201 |
aatttctgatct |
212 |
Q |
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| T |
21368668 |
aacttctgatct |
21368657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 97
Target Start/End: Original strand, 35358118 - 35358186
Alignment:
| Q |
29 |
agaacaagttctctcataattatgcacatggccgaaaagaaccaagtcaacctgtttcatgttcacaat |
97 |
Q |
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||||||| |||| ||||| |||||||||| || ||||||||||||||||||||||||||||| ||||| |
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| T |
35358118 |
agaacaaattctttcatatctatgcacatgaccaaaaagaaccaagtcaacctgtttcatgtttacaat |
35358186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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