View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3361_low_21 (Length: 238)
Name: NF3361_low_21
Description: NF3361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3361_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 107; Significance: 9e-54; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 15 - 129
Target Start/End: Complemental strand, 37811875 - 37811761
Alignment:
| Q |
15 |
gtagcaaaggtaggtctaaatcgaaacgcgatgaagagatggagtattcagtggaaactcgatactccttgcataagaggaaagatagagaacatagcga |
114 |
Q |
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| T |
37811875 |
gtagctaaggtaggtctaaatcgaagcgcgatgaagagatggagtattcagtggaaactcgatactccttgcataagaggaaagatagagaacatagcga |
37811776 |
T |
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| Q |
115 |
ggatagggaattgga |
129 |
Q |
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| T |
37811775 |
ggatagggaattgga |
37811761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 128 - 187
Target Start/End: Complemental strand, 37811738 - 37811679
Alignment:
| Q |
128 |
gaagcaaagaaggaacgtaggagatttggtgataaacttggaagcctctctagtagtgat |
187 |
Q |
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| T |
37811738 |
gaagcaaagaaggaacgtaggagatttggtgataaacttggaagcctctctagtagtgat |
37811679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 15 - 129
Target Start/End: Complemental strand, 52357277 - 52357166
Alignment:
| Q |
15 |
gtagcaaaggtaggtctaaatcgaaacgcgatgaagagatggagtattcagtggaaactcgatactccttgcataagaggaaagatagagaacatagcga |
114 |
Q |
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||||||||||||||||||||||||| ||||||||||||| ||| ||||| |||| |||||||||| ||||||||||||||| |||||||||||||| |
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| T |
52357277 |
gtagcaaaggtaggtctaaatcgaagcgcgatgaagagagggaagattcattggag---cgatactcctcgcataagaggaaagacagagaacatagcga |
52357181 |
T |
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| Q |
115 |
ggatagggaattgga |
129 |
Q |
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|||| |||||||||| |
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| T |
52357180 |
ggatcgggaattgga |
52357166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 129
Target Start/End: Complemental strand, 17209546 - 17209436
Alignment:
| Q |
19 |
caaaggtaggtctaaatcgaaacgcgatgaagagatggagtattcagtggaaactcgatactccttgcataagaggaaagatagagaacatagcgaggat |
118 |
Q |
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||||||||||| || |||||| | | | |||||||||||| |||||||| || | | |||||||| ||||||||||||||||||||||||||||||||| |
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| T |
17209546 |
caaaggtaggtatatatcgaagcactacgaagagatggaggattcagtgaaaccgcaatactcctcgcataagaggaaagatagagaacatagcgaggac |
17209447 |
T |
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| Q |
119 |
agggaattgga |
129 |
Q |
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|||||||||| |
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| T |
17209446 |
cgggaattgga |
17209436 |
T |
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