View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3361_low_4 (Length: 450)

Name: NF3361_low_4
Description: NF3361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3361_low_4
NF3361_low_4
[»] chr2 (10 HSPs)
chr2 (11-450)||(37182069-37182508)
chr2 (77-146)||(13800846-13800915)
chr2 (77-137)||(11952943-11953003)
chr2 (88-140)||(21666041-21666093)
chr2 (60-139)||(11913055-11913134)
chr2 (99-146)||(29694084-29694131)
chr2 (88-146)||(45156355-45156413)
chr2 (77-146)||(28425877-28425946)
chr2 (88-136)||(21190934-21190982)
chr2 (88-136)||(30175529-30175577)
[»] chr6 (2 HSPs)
chr6 (88-149)||(20611501-20611562)
chr6 (60-153)||(4036779-4036870)
[»] chr1 (2 HSPs)
chr1 (60-151)||(39135042-39135133)
chr1 (88-136)||(5128255-5128303)
[»] chr4 (5 HSPs)
chr4 (60-152)||(22315787-22315879)
chr4 (104-147)||(22076987-22077030)
chr4 (88-135)||(36363218-36363265)
chr4 (88-136)||(24404209-24404256)
chr4 (88-140)||(36118806-36118858)
[»] chr7 (7 HSPs)
chr7 (88-143)||(7398159-7398214)
chr7 (86-148)||(26918029-26918091)
chr7 (77-131)||(20152915-20152969)
chr7 (99-146)||(27237776-27237823)
chr7 (89-127)||(36903643-36903681)
chr7 (88-148)||(12419833-12419893)
chr7 (11-43)||(23858883-23858915)
[»] chr8 (9 HSPs)
chr8 (87-145)||(38009489-38009547)
chr8 (99-146)||(15078456-15078503)
chr8 (88-148)||(5973369-5973429)
chr8 (104-143)||(41063077-41063116)
chr8 (88-146)||(7944774-7944832)
chr8 (92-146)||(39332586-39332640)
chr8 (65-134)||(5721437-5721506)
chr8 (109-146)||(25562042-25562079)
chr8 (60-140)||(8645920-8646000)
[»] scaffold1320 (1 HSPs)
scaffold1320 (99-146)||(1052-1099)
[»] chr5 (5 HSPs)
chr5 (88-134)||(1366852-1366898)
chr5 (88-146)||(24395445-24395503)
chr5 (66-127)||(4931860-4931921)
chr5 (88-147)||(11242659-11242718)
chr5 (88-146)||(15639157-15639215)
[»] chr3 (1 HSPs)
chr3 (88-146)||(28689806-28689864)


Alignment Details
Target: chr2 (Bit Score: 345; Significance: 0; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 11 - 450
Target Start/End: Complemental strand, 37182508 - 37182069
Alignment:
Q  11 cagagagaaagagaataaggaatttttatttatttatttagtgtagtac-actgagctataatttcctttttgacgctcataccttggagaggtccagct 109  Q
    ||||||||||||||||||| |||||||||||||||| |  | ||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  37182508 cagagagaaagagaataagaaatttttatttatttagtggg-gtagtaccactgagctataatttcctttttgacgctcttaccttggggaggtccagct 37182410  T
Q  110 ccattgagctctttgcacaccccaaggtccgaccctgcttataatagtgattaaagggtgtaattattaagaataaaacaaaccatagttgaactcattg 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||| ||||||||||||||| ||||||||||||    
T  37182409 ccattgagctctttgcacaccccaaggtccgaccctgcttataatagtgatcagaaggtgtaattattaagcataaaacaaaccataattgaactcattg 37182310  T
Q  210 attcaattgaaccatagtttagatctctcgttggattgaactagacggtcgaannnnnnnnattttcgttgtgacttaaccttagtatttttctcagtgt 309  Q
    ||||||||||||||||||||||||||||| ||||||||||||| ||||||||         |||||||||||||||||||||||||||||||||||||||    
T  37182309 attcaattgaaccatagtttagatctctccttggattgaactatacggtcgatttttttatattttcgttgtgacttaaccttagtatttttctcagtgt 37182210  T
Q  310 tctcatacggagataacttataagtcaatgcaacaatatttgtataatgcacatgcggttgttgaaaggtgacaaatattggcagtgaaaatattactag 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37182209 tctcatacggagataacttataagtcaatgcaacaatatttgtataatgcacatgcggttgttgaaaggtgacaaatattggcagtgaaaatattactag 37182110  T
Q  410 gtgacaatgacattggcaatggtggaaggggcaatgacaaa 450  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  37182109 gtgacaatgacattggcaatggtggaaggggcaatgacaaa 37182069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 77 - 146
Target Start/End: Original strand, 13800846 - 13800915
Alignment:
Q  77 tttttgacgctcataccttggagaggtccagctccattgagctctttgcacaccccaaggtccgaccctg 146  Q
    ||||||| |||||||||||||| ||  ||| |||||||||||| ||||||||||||||||||||||||||    
T  13800846 tttttgaggctcataccttggaaagacccaactccattgagctttttgcacaccccaaggtccgaccctg 13800915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 77 - 137
Target Start/End: Original strand, 11952943 - 11953003
Alignment:
Q  77 tttttgacgctcataccttggagaggtccagctccattgagctctttgcacaccccaaggt 137  Q
    ||||||| ||||||||||||| |||| |||| |||||||||||| ||||||||||||||||    
T  11952943 tttttgaggctcataccttggggaggcccagttccattgagctccttgcacaccccaaggt 11953003  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 88 - 140
Target Start/End: Original strand, 21666041 - 21666093
Alignment:
Q  88 cataccttggagaggtccagctccattgagctctttgcacaccccaaggtccg 140  Q
    |||||||||| |||| |||| |||||||||||| |||||||||||||||||||    
T  21666041 cataccttggggaggcccagttccattgagctccttgcacaccccaaggtccg 21666093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 60 - 139
Target Start/End: Original strand, 11913055 - 11913134
Alignment:
Q  60 actgagctataatttcctttttgacgctcataccttggagaggtccagctccattgagctctttgcacaccccaaggtcc 139  Q
    |||| |||||||| |  ||||||| | ||||||||| |||||| ||| ||||||||| ||||||||||||||||| ||||    
T  11913055 actgtgctataatattttttttgaagttcataccttagagaggcccaactccattgaactctttgcacaccccaaagtcc 11913134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 99 - 146
Target Start/End: Complemental strand, 29694131 - 29694084
Alignment:
Q  99 gaggtccagctccattgagctctttgcacaccccaaggtccgaccctg 146  Q
    |||| |||||||||||||||||||||||||||||||||| || |||||    
T  29694131 gaggcccagctccattgagctctttgcacaccccaaggtgcggccctg 29694084  T

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Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 88 - 146
Target Start/End: Original strand, 45156355 - 45156413
Alignment:
Q  88 cataccttggagaggtccagctccattgagctctttgcacaccccaaggtccgaccctg 146  Q
    |||||||||| |||| |||||||||||||||| ||||||| |||||||| |||| ||||    
T  45156355 cataccttggggaggcccagctccattgagctgtttgcaccccccaagggccgagcctg 45156413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 77 - 146
Target Start/End: Original strand, 28425877 - 28425946
Alignment:
Q  77 tttttgacgctcataccttggagaggtccagctccattgagctctttgcacaccccaaggtccgaccctg 146  Q
    ||||||| || |||||||||| | ||||||| |||||||||   |||||||||||||||||| |||||||    
T  28425877 tttttgaggcccataccttggggtggtccagttccattgagtggtttgcacaccccaaggtcggaccctg 28425946  T

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Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 88 - 136
Target Start/End: Original strand, 21190934 - 21190982
Alignment:
Q  88 cataccttggagaggtccagctccattgagctctttgcacaccccaagg 136  Q
    |||||||||| |||| |||||||||||||||| ||||||| ||||||||    
T  21190934 cataccttggggaggcccagctccattgagctgtttgcaccccccaagg 21190982  T

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Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 88 - 136
Target Start/End: Complemental strand, 30175577 - 30175529
Alignment:
Q  88 cataccttggagaggtccagctccattgagctctttgcacaccccaagg 136  Q
    |||||||||| |||| |||||||||||||||| ||||||| ||||||||    
T  30175577 cataccttggggaggcccagctccattgagctgtttgcaccccccaagg 30175529  T

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Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 88 - 149
Target Start/End: Complemental strand, 20611562 - 20611501
Alignment:
Q  88 cataccttggagaggtccagctccattgagctctttgcacaccccaaggtccgaccctgctt 149  Q
    |||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  20611562 cataccttagggaggcccagctccattgagctctttgcacaccccaaggtccgaccctgctt 20611501  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 60 - 153
Target Start/End: Complemental strand, 4036870 - 4036779
Alignment:
Q  60 actgagctataatttcctttttgacgctcataccttggagaggtccagctccattgagctctttgcacaccccaaggtccgaccctgcttataa 153  Q
    |||| ||||||||||  ||||||| |||||||| |||| |||| ||| |||||||||||  |||||||||||||||||||||||||||| ||||    
T  4036870 actgggctataattt--tttttgaggctcatacattggggaggcccaactccattgagcgttttgcacaccccaaggtccgaccctgctcataa 4036779  T

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Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 60 - 151
Target Start/End: Original strand, 39135042 - 39135133
Alignment:
Q  60 actgagctataatttcctttttgacgctcataccttggagaggtccagctccattgagctctttgcacaccccaaggtccgaccctgcttat 151  Q
    |||| ||||||||||  ||||||| || |||||||||| |||| |||| ||||||||||||||||||||||||||||| || ||||| ||||    
T  39135042 actgggctataattttgtttttgaggcccataccttggggaggcccagttccattgagctctttgcacaccccaaggttcggccctgattat 39135133  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 88 - 136
Target Start/End: Original strand, 5128255 - 5128303
Alignment:
Q  88 cataccttggagaggtccagctccattgagctctttgcacaccccaagg 136  Q
    |||| |||||||||| |||||||||||||||| ||| ||| ||||||||    
T  5128255 catatcttggagaggcccagctccattgagctgtttacaccccccaagg 5128303  T

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Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 60 - 152
Target Start/End: Original strand, 22315787 - 22315879
Alignment:
Q  60 actgagctataatttcctttttgacgctcataccttggagaggtccagctccattgagctctttgcacaccccaaggtccgaccctgcttata 152  Q
    |||| ||||||||||  ||| ||| ||||||||||||| ||||||||||||||||||||| ||||||| ||| |||| |||| ||||| ||||    
T  22315787 actgggctataattttttttatgaggctcataccttggggaggtccagctccattgagctgtttgcaccccctaagggccgagcctgcatata 22315879  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 147
Target Start/End: Complemental strand, 22077030 - 22076987
Alignment:
Q  104 ccagctccattgagctctttgcacaccccaaggtccgaccctgc 147  Q
    |||||||||||||||  |||||||||||||||||||| ||||||    
T  22077030 ccagctccattgagcggtttgcacaccccaaggtccggccctgc 22076987  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 135
Target Start/End: Original strand, 36363218 - 36363265
Alignment:
Q  88 cataccttggagaggtccagctccattgagctctttgcacaccccaag 135  Q
    |||||||||||||||  ||||||||||||||||||||  |||||||||    
T  36363218 cataccttggagaggctcagctccattgagctctttgtccaccccaag 36363265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 88 - 136
Target Start/End: Complemental strand, 24404256 - 24404209
Alignment:
Q  88 cataccttggagaggtccagctccattgagctctttgcacaccccaagg 136  Q
    |||||||||| |||| |||||||||||||||| ||||||| ||||||||    
T  24404256 cataccttggggaggcccagctccattgagctgtttgcac-ccccaagg 24404209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 88 - 140
Target Start/End: Original strand, 36118806 - 36118858
Alignment:
Q  88 cataccttggagaggtccagctccattgagctctttgcacaccccaaggtccg 140  Q
    |||||||||||||||   ||||||||||||||||||| ||||| ||| |||||    
T  36118806 cataccttggagaggcgtagctccattgagctctttgtacacctcaaagtccg 36118858  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 88 - 143
Target Start/End: Complemental strand, 7398214 - 7398159
Alignment:
Q  88 cataccttggagaggtccagctccattgagctctttgcacaccccaaggtccgacc 143  Q
    |||||||||| ||||  |||||||||||||||| ||||||||||||||||||||||    
T  7398214 cataccttggggaggctcagctccattgagctcgttgcacaccccaaggtccgacc 7398159  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 86 - 148
Target Start/End: Original strand, 26918029 - 26918091
Alignment:
Q  86 ctcataccttggagaggtccagctccattgagctctttgcacaccccaaggtccgaccctgct 148  Q
    |||||||||| |||| | |||||||||||||||||||||||||||| ||  ||||||||||||    
T  26918029 ctcataccttagagatgcccagctccattgagctctttgcacaccctaaaatccgaccctgct 26918091  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 77 - 131
Target Start/End: Complemental strand, 20152969 - 20152915
Alignment:
Q  77 tttttgacgctcataccttggagaggtccagctccattgagctctttgcacaccc 131  Q
    ||||||| | ||||||||| ||||||  |||||||||||||||||||||||||||    
T  20152969 tttttgaagttcataccttagagaggctcagctccattgagctctttgcacaccc 20152915  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 146
Target Start/End: Original strand, 27237776 - 27237823
Alignment:
Q  99 gaggtccagctccattgagctctttgcacaccccaaggtccgaccctg 146  Q
    |||| ||| ||||||||||||||||||||||||||| ||||| |||||    
T  27237776 gaggcccaactccattgagctctttgcacaccccaaagtccggccctg 27237823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 127
Target Start/End: Original strand, 36903643 - 36903681
Alignment:
Q  89 ataccttggagaggtccagctccattgagctctttgcac 127  Q
    |||||||||||||| ||||||| ||||||||||||||||    
T  36903643 ataccttggagaggcccagctcaattgagctctttgcac 36903681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 88 - 148
Target Start/End: Original strand, 12419833 - 12419893
Alignment:
Q  88 cataccttggagaggtccagctccattgagctctttgcacaccccaaggtccgaccctgct 148  Q
    |||||||||| |||| || | |||||||| ||| ||||| ||||||||||||| |||||||    
T  12419833 cataccttggtgaggcccggttccattgaactccttgcagaccccaaggtccggccctgct 12419893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 43
Target Start/End: Complemental strand, 23858915 - 23858883
Alignment:
Q  11 cagagagaaagagaataaggaatttttatttat 43  Q
    ||||||||||||||||||||||||||| |||||    
T  23858915 cagagagaaagagaataaggaatttttgtttat 23858883  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 87 - 145
Target Start/End: Original strand, 38009489 - 38009547
Alignment:
Q  87 tcataccttggagaggtccagctccattgagctctttgcacaccccaaggtccgaccct 145  Q
    ||||||||||| ||||  ||||||||||||||||||| |||||||||||||||| ||||    
T  38009489 tcataccttggggaggctcagctccattgagctctttacacaccccaaggtccggccct 38009547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 99 - 146
Target Start/End: Complemental strand, 15078503 - 15078456
Alignment:
Q  99 gaggtccagctccattgagctctttgcacaccccaaggtccgaccctg 146  Q
    |||||||| ||||||||||||||||||  |||||||||||||||||||    
T  15078503 gaggtccaactccattgagctctttgcgtaccccaaggtccgaccctg 15078456  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 88 - 148
Target Start/End: Original strand, 5973369 - 5973429
Alignment:
Q  88 cataccttggagaggtccagctccattgagctctttgcacaccccaaggtccgaccctgct 148  Q
    |||||||||| |||| |||||||||||||||  |||||| ||||||||||| | |||||||    
T  5973369 cataccttggggaggcccagctccattgagcggtttgcagaccccaaggtctggccctgct 5973429  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 143
Target Start/End: Complemental strand, 41063116 - 41063077
Alignment:
Q  104 ccagctccattgagctctttgcacaccccaaggtccgacc 143  Q
    |||||||||||||||  |||||||||||||||||||||||    
T  41063116 ccagctccattgagcggtttgcacaccccaaggtccgacc 41063077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 88 - 146
Target Start/End: Original strand, 7944774 - 7944832
Alignment:
Q  88 cataccttggagaggtccagctccattgagctctttgcacaccccaaggtccgaccctg 146  Q
    |||||||||| || | |||| |||||||| |  ||||||||||||||||||||||||||    
T  7944774 cataccttggggaagcccagttccattgaacggtttgcacaccccaaggtccgaccctg 7944832  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 92 - 146
Target Start/End: Original strand, 39332586 - 39332640
Alignment:
Q  92 ccttggagaggtccagctccattgagctctttgcacaccccaaggtccgaccctg 146  Q
    |||||| || |||||| ||||||||||  |||||||| |||||||||||||||||    
T  39332586 ccttggggatgtccagttccattgagcggtttgcacatcccaaggtccgaccctg 39332640  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 134
Target Start/End: Complemental strand, 5721506 - 5721437
Alignment:
Q  65 gctataatttcctttttgacgctcataccttggagaggtccagctccattgagctctttgcacaccccaa 134  Q
    ||||||||||  ||||||| || ||| |||||| |||| |||| ||||||||||  ||||||||||||||    
T  5721506 gctataattttttttttgaggcccatgccttggggaggcccagttccattgagcggtttgcacaccccaa 5721437  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 146
Target Start/End: Original strand, 25562042 - 25562079
Alignment:
Q  109 tccattgagctctttgcacaccccaaggtccgaccctg 146  Q
    |||||||||||| ||||||||||||||||||| |||||    
T  25562042 tccattgagctccttgcacaccccaaggtccggccctg 25562079  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 140
Target Start/End: Complemental strand, 8646000 - 8645920
Alignment:
Q  60 actgagctataatttcctttttgacgctcataccttggagaggtccagctccattgagctctttgcacaccccaaggtccg 140  Q
    |||||| ||||||||  ||||| | |||||||| |||  ||||  ||| |||||||||||| ||||||||| |||||||||    
T  8646000 actgagttataattttttttttaaagctcatactttgaggaggctcagttccattgagctccttgcacaccacaaggtccg 8645920  T

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Target: scaffold1320 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold1320
Description:

Target: scaffold1320; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 99 - 146
Target Start/End: Complemental strand, 1099 - 1052
Alignment:
Q  99 gaggtccagctccattgagctctttgcacaccccaaggtccgaccctg 146  Q
    |||||||| ||||||||||||||||||  |||||||||||||||||||    
T  1099 gaggtccaactccattgagctctttgcgtaccccaaggtccgaccctg 1052  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 88 - 134
Target Start/End: Original strand, 1366852 - 1366898
Alignment:
Q  88 cataccttggagaggtccagctccattgagctctttgcacaccccaa 134  Q
    |||| |||||||||| |||||||||||||||||||||| ||||||||    
T  1366852 catatcttggagaggcccagctccattgagctctttgctcaccccaa 1366898  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 88 - 146
Target Start/End: Complemental strand, 24395503 - 24395445
Alignment:
Q  88 cataccttggagaggtccagctccattgagctctttgcacaccccaaggtccgaccctg 146  Q
    |||||||||| |||| | |||||||||||||||||||||| ||| |||||||| |||||    
T  24395503 cataccttggggaggcctagctccattgagctctttgcacgccctaaggtccggccctg 24395445  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 66 - 127
Target Start/End: Original strand, 4931860 - 4931921
Alignment:
Q  66 ctataatttcctttttgacgctcataccttggagaggtccagctccattgagctctttgcac 127  Q
    |||||||||  ||| ||| || |||||||||| ||||||||||||||||||||| |||||||    
T  4931860 ctataattttttttatgaggcgcataccttggggaggtccagctccattgagctatttgcac 4931921  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 147
Target Start/End: Original strand, 11242659 - 11242718
Alignment:
Q  88 cataccttggagaggtccagctccattgagctctttgcacaccccaaggtccgaccctgc 147  Q
    ||||||||||||||| | || |||||||| ||| ||||||||| ||||||||| ||||||    
T  11242659 cataccttggagaggccaagttccattgaactccttgcacacctcaaggtccggccctgc 11242718  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 88 - 146
Target Start/End: Complemental strand, 15639215 - 15639157
Alignment:
Q  88 cataccttggagaggtccagctccattgagctctttgcacaccccaaggtccgaccctg 146  Q
    |||||||||| ||| ||||| |||||||||||| ||||||||| |||||| || |||||    
T  15639215 cataccttggggagctccagttccattgagctccttgcacacctcaaggtacggccctg 15639157  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 88 - 146
Target Start/End: Original strand, 28689806 - 28689864
Alignment:
Q  88 cataccttggagaggtccagctccattgagctctttgcacaccccaaggtccgaccctg 146  Q
    |||||||||| || |||| | ||||||||||||||||||||||| ||| ||||||||||    
T  28689806 cataccttggggatgtccggttccattgagctctttgcacaccctaagatccgaccctg 28689864  T

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