View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3361_low_8 (Length: 330)
Name: NF3361_low_8
Description: NF3361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3361_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 19 - 328
Target Start/End: Complemental strand, 28978061 - 28977752
Alignment:
| Q |
19 |
cccatcactcttctcactaactcttcaccaccttcacactctatctcttcaacaaaaaactctcctcatttcacgccacctcctttcctttctacacctc |
118 |
Q |
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| T |
28978061 |
cccatcactcttctcactaactcttcaccaccttcacactctatctcttcaacaaaaaactctcctcatttcacgccacctcctttcctttctacacctc |
28977962 |
T |
|
| Q |
119 |
ctcactcaatcaaacaaccccacctcacctcttccacctcctgtttcaacttccatgagagaacgtgacaccgacgctgtgttactccttctcctcttct |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
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| T |
28977961 |
ctcactcaatcaaacaaccccacctcacctcttccacctcctgtttcaacttccatgagagaacgtgacaccgacgctgtgttactccttctgttgttct |
28977862 |
T |
|
| Q |
219 |
gtgaaacacataaatacaacccagaagctttaaccgcaccgttttcacactggaggctagacgtgaacaaaatattctccaacacattgttaacgctttc |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |||||||||||||||||||||||||| |
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| T |
28977861 |
gtgaaacacataaatacaacccagaagctttaaccgcaccgttttcacactggaggctaaacttgaacaaaatcttctccaacacattgttaacgctttc |
28977762 |
T |
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| Q |
319 |
ctatgcttct |
328 |
Q |
| |
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||| ||||| |
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| T |
28977761 |
ttattcttct |
28977752 |
T |
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