View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3362_high_1 (Length: 464)
Name: NF3362_high_1
Description: NF3362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3362_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 17 - 454
Target Start/End: Original strand, 19418152 - 19418596
Alignment:
| Q |
17 |
actttcctcgctttgctcggtattggtgtagccatgtctgaaacctacaaagaagtgccggaaacagacgtaatagc----tttctttcatagtttcaca |
112 |
Q |
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| T |
19418152 |
actttcctcgctttgctcggtattggtgtagccatgtctgaaacctacaaagaggtgccggaaacagacgtaatagcattctttctttcatagtttcaca |
19418251 |
T |
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| Q |
113 |
tcataaataatttttacatacaattagaggttttttattgaattacttgcaaaccaaatcaatatgtgttatagaaaataaaagtattttggcatttatc |
212 |
Q |
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| T |
19418252 |
tcataaataatttttatatacaattagaggttttatattgaattacttgcaaaccaaatcaatatgtgttatagaaaataaaagtattttggcacttatc |
19418351 |
T |
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| Q |
213 |
attggtccatctggaagttat----gtattgatctgatctttttcgggaagataataatgaatgtatagccactggtagagagtaattctcctcttgaaa |
308 |
Q |
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| T |
19418352 |
attggtccatctggaagttatatatgtattgatctgatctttttcgggaagataataatgaatgtatagccactggtagagagtaactctcctcttgaaa |
19418451 |
T |
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| Q |
309 |
atgggttttaaaatatttaaggtaatccctatccattttgagtggttagtggaacctttattctcctcgagtcatttatagaggtttgtatggttgttaa |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
19418452 |
atgggttttaaaatatttaaggtaatccctatccattttgagtggttagtggaacctttattctcctctaatcatttatagaggtttgtatggttgttaa |
19418551 |
T |
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| Q |
409 |
ggatggagnnnnnnngtgtgtttggtacttgatgttgtcacctttg |
454 |
Q |
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| T |
19418552 |
ggatggagttttttt-tgtgtttggcgcttgatgttgtcacctttg |
19418596 |
T |
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