View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3363_high_12 (Length: 404)
Name: NF3363_high_12
Description: NF3363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3363_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 345; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 19 - 395
Target Start/End: Complemental strand, 27066154 - 27065778
Alignment:
| Q |
19 |
tcaaaggctatgctaaaggtgctgatttagatcataaggtttcgtttaaagtttacaatgggaataataatacatttaaggattatgacaagaaaggtat |
118 |
Q |
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| T |
27066154 |
tcaaaggctatgctaaaggtgctgatttagatcataaggtttcgtttaaagtttacaatgggaataataatacatttaaggattatgacaagaaaggtat |
27066055 |
T |
|
| Q |
119 |
ttcttttgctagttataataaaactactgcttcaactaactctcttagtgatagtggtagtttggcaaaaaacatggttcaacctggtaagtttttccgg |
218 |
Q |
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| T |
27066054 |
ttcttttgctagttataataaaactactacttcaactaactctctcagtgatagtggtagtttggcaaaaaacatggttcaacctggtaagtttttccgg |
27065955 |
T |
|
| Q |
219 |
gagaaaatgttgaaggaagggacagttatgcctatgccagatataagggataaattaccgccaaggtcgtttttgcctcgttccattttgaccaaattgc |
318 |
Q |
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| T |
27065954 |
gagaagatgttgaaggaagggacagttatgcctatgccagatataagggataaattaccgccaaggtcgtttttgcctcgttccattttgaccaaattgc |
27065855 |
T |
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| Q |
319 |
catttgcatcctctaagttgaatgagatgaagcaggtttttaaggtgtccgagaattcttcgatgaacaaaatgatg |
395 |
Q |
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| T |
27065854 |
catttgcatcttctaagttgaatgagatgaagcaagttttcaaggtgtccgagaattcttcgatgaataagatgatg |
27065778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 83 - 383
Target Start/End: Complemental strand, 27079810 - 27079507
Alignment:
| Q |
83 |
taataatacatttaaggattatgacaagaaaggtatttcttttgctagttataataaaa---ctactgcttcaactaactctcttagtgatagtggtagt |
179 |
Q |
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|||||| || ||||||||||| || || |||||||||||||||||| |||||| ||| | || || ||||||| || ||| ||||||| |||| |||| |
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| T |
27079810 |
taataacacgtttaaggattacgataaaaaaggtatttcttttgctggttatactaagaaatcttcttcttcaacaaattctgttagtgaaagtgttagt |
27079711 |
T |
|
| Q |
180 |
ttggcaaaaaacatggttcaacctggtaagtttttccgggagaaaatgttgaaggaagggacagttatgcctatgccagatataagggataaattaccgc |
279 |
Q |
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||||||||||| |||||||||||||||||||||||| || || |||||||| ||||| |||||||||||||| ||||| | |||||||||||||| |
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| T |
27079710 |
ttggcaaaaaaatgggttcaacctggtaagtttttccgagaaaagatgttgaaacaaggggtggttatgcctatgccggatattaaggataaattaccgc |
27079611 |
T |
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| Q |
280 |
caaggtcgtttttgcctcgttccattttgaccaaattgccatttgcatcctctaagttgaatgagatgaagcaggtttttaaggtgtccgagaattcttc |
379 |
Q |
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| T |
27079610 |
caaggtcgtttttaccacgtaccattttgaccaaattaccctttgcatcttctaagttgaatgagttgaagcaagtttttaaggtgtctgagaattcctc |
27079511 |
T |
|
| Q |
380 |
gatg |
383 |
Q |
| |
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|||| |
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| T |
27079510 |
gatg |
27079507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 193 - 376
Target Start/End: Complemental strand, 27053538 - 27053355
Alignment:
| Q |
193 |
tggttcaacctggtaagtttttccgggagaaaatgttgaaggaagggacagttatgcctatgccagatataagggataaattaccgccaaggtcgttttt |
292 |
Q |
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||||| |||| |||||||||||||| || | ||||||||||||||||| ||||||||||||||||||| ||||||||| ||||| || ||||||||||| |
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| T |
27053538 |
tggttgaaccaggtaagtttttccgcgaaaggatgttgaaggaagggactgttatgcctatgccagatacaagggataagttaccacctaggtcgttttt |
27053439 |
T |
|
| Q |
293 |
gcctcgttccattttgaccaaattgccatttgcatcctctaagttgaatgagatgaagcaggtttttaaggtgtccgagaattc |
376 |
Q |
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||| ||||||||||||| ||||||||| |||||||| ||||||||||| | |||||||| ||||| |||||||| || ||||| |
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| T |
27053438 |
gccacgttccattttgatcaaattgccctttgcatcttctaagttgaacaatatgaagcaagttttcaaggtgtctgaaaattc |
27053355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 171 - 292
Target Start/End: Original strand, 14866036 - 14866157
Alignment:
| Q |
171 |
agtggtagtttggcaaaaaacatggttcaacctggtaagtttttccgggagaaaatgttgaaggaagggacagttatgcctatgccagatataagggata |
270 |
Q |
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||||||||||||| |||||| |||| | |||||||||||||| | |||||||||||||| ||||| || || ||||||||||| ||||| || |||| |
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| T |
14866036 |
agtggtagtttggtaaaaaaatgggttgagcctggtaagttttttagagagaaaatgttgaaagaaggtacggtaatgcctatgcctgatattagagata |
14866135 |
T |
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| Q |
271 |
aattaccgccaaggtcgttttt |
292 |
Q |
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||||||| |||||||||||| |
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| T |
14866136 |
aattacctaaaaggtcgttttt |
14866157 |
T |
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