View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3363_high_17 (Length: 331)
Name: NF3363_high_17
Description: NF3363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3363_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 17 - 316
Target Start/End: Original strand, 2176669 - 2176971
Alignment:
| Q |
17 |
caaatacatttgactttttgaatattttttcttatatttcattctagagaggctatatgttggttcaagttgacagaatggtaactcggtccattgggag |
116 |
Q |
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| T |
2176669 |
caaatacatttgactttttgaatattttttcttatatttcattctagagaggttatatgttggttcaagttgacagaatggtaactcggtccattgggag |
2176768 |
T |
|
| Q |
117 |
tgctataagctcagaagcaacatccttgaatggaagaactcc---ttctttgcatttaaattttgacagtaacttagctgcttcttcctttgtcatcttc |
213 |
Q |
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||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2176769 |
tgctataagttcagaagcaacatccttgaatggaagaactcctccttctttgcatttaaattttgacagtaacttagctgcttcttcctttgtcatcttt |
2176868 |
T |
|
| Q |
214 |
accttcactctagtaacattcatcctttctctttctcctaataattcatcaatataattactaccacagcttcttcttcctttcatcaactcatcctttt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2176869 |
accttcactctagtaacattcatcctttctctttctcctaataattcatcaatataattactaccacagcttcttcttcctttcatcaactcatcctttt |
2176968 |
T |
|
| Q |
314 |
cat |
316 |
Q |
| |
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||| |
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| T |
2176969 |
cat |
2176971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 45
Target Start/End: Complemental strand, 31846153 - 31846124
Alignment:
| Q |
16 |
tcaaatacatttgactttttgaatattttt |
45 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
31846153 |
tcaaatacatttgactttttgaatattttt |
31846124 |
T |
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