View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3363_high_18 (Length: 317)

Name: NF3363_high_18
Description: NF3363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3363_high_18
NF3363_high_18
[»] chr5 (7 HSPs)
chr5 (59-301)||(1697258-1697502)
chr5 (1-59)||(31155659-31155718)
chr5 (1-59)||(39760423-39760482)
chr5 (1-64)||(31155364-31155428)
chr5 (1-59)||(31156210-31156269)
chr5 (1-58)||(31155893-31155951)
chr5 (1-58)||(39761631-39761689)
[»] chr8 (4 HSPs)
chr8 (1-63)||(3068769-3068832)
chr8 (1-65)||(3305612-3305677)
chr8 (1-60)||(3069091-3069151)
chr8 (1-59)||(3305936-3305995)
[»] chr6 (11 HSPs)
chr6 (1-67)||(16368917-16368984)
chr6 (1-59)||(6851248-6851307)
chr6 (1-59)||(16766288-16766347)
chr6 (8-61)||(29847003-29847057)
chr6 (1-56)||(20582638-20582694)
chr6 (1-60)||(33746710-33746770)
chr6 (1-59)||(11246368-11246427)
chr6 (1-59)||(33746968-33747027)
chr6 (1-58)||(16766577-16766635)
chr6 (1-61)||(29846786-29846847)
chr6 (1-60)||(16368639-16368699)
[»] chr4 (13 HSPs)
chr4 (1-59)||(23254694-23254753)
chr4 (1-58)||(23254377-23254435)
chr4 (1-60)||(41315897-41315957)
chr4 (1-59)||(41316215-41316274)
chr4 (1-57)||(15874229-15874286)
chr4 (1-61)||(42305902-42305963)
chr4 (1-59)||(38484460-38484519)
chr4 (1-58)||(38485185-38485243)
chr4 (1-60)||(15874545-15874605)
chr4 (1-59)||(42306221-42306280)
chr4 (4-60)||(55893491-55893548)
chr4 (1-59)||(20878692-20878751)
chr4 (9-59)||(55893213-55893264)
[»] chr3 (11 HSPs)
chr3 (1-59)||(33794433-33794492)
chr3 (1-58)||(40560776-40560834)
chr3 (1-60)||(5048321-5048381)
chr3 (1-60)||(20124653-20124713)
chr3 (1-60)||(31724351-31724411)
chr3 (1-59)||(2439769-2439828)
chr3 (1-59)||(5048003-5048062)
chr3 (1-59)||(14783734-14783793)
chr3 (1-59)||(14784038-14784097)
chr3 (7-62)||(31724671-31724727)
chr3 (1-50)||(2440087-2440137)
[»] chr1 (10 HSPs)
chr1 (1-62)||(34492546-34492608)
chr1 (1-61)||(52331404-52331465)
chr1 (1-59)||(7710019-7710078)
chr1 (1-57)||(13618601-13618658)
chr1 (1-59)||(52331724-52331783)
chr1 (1-58)||(7709700-7709758)
chr1 (1-62)||(13618252-13618314)
chr1 (1-57)||(13618418-13618475)
chr1 (1-58)||(34492237-34492295)
chr1 (1-58)||(37646974-37647032)
[»] chr7 (8 HSPs)
chr7 (1-61)||(37873414-37873475)
chr7 (1-55)||(9402563-9402618)
chr7 (1-63)||(32793100-32793163)
chr7 (1-59)||(37879167-37879226)
chr7 (1-62)||(24825555-24825617)
chr7 (1-58)||(32792783-32792841)
chr7 (4-58)||(24825880-24825935)
chr7 (1-61)||(11324365-11324426)
[»] chr2 (6 HSPs)
chr2 (1-61)||(4732000-4732061)
chr2 (1-66)||(12414154-12414220)
chr2 (1-66)||(12426214-12426280)
chr2 (1-58)||(4731715-4731773)
chr2 (7-59)||(12413837-12413890)
chr2 (7-59)||(12425897-12425950)
[»] scaffold0184 (2 HSPs)
scaffold0184 (5-60)||(7016-7072)
scaffold0184 (1-58)||(7270-7328)
[»] scaffold0291 (2 HSPs)
scaffold0291 (1-61)||(10951-11012)
scaffold0291 (1-59)||(11372-11431)
[»] scaffold0032 (1 HSPs)
scaffold0032 (1-60)||(33233-33293)
[»] scaffold1408 (1 HSPs)
scaffold1408 (5-57)||(1745-1798)
[»] scaffold0428 (2 HSPs)
scaffold0428 (5-57)||(7491-7544)
scaffold0428 (1-57)||(7792-7849)


Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 59 - 301
Target Start/End: Original strand, 1697258 - 1697502
Alignment:
Q  59 ttttattaactacttaattactaactaatataataatttcatgcggaggagaatcaagatgaacttgtggtaacaatcgtgatgtaaggattccatcgca 158  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1697258 ttttattaactacttaattactaactaatataataatttcatgcggaggagaatcaagatgaacttgtggtaacaatcgtgatgtaaggattccatcgca 1697357  T
Q  159 acaccccaaatgcagaagaggttgtttgggtgctagaaaatttacctgcaaatattaatactccaacattcatgttccgaataagttggaaaagcgtgta 258  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  1697358 acgccccaaatgcagaagaggttgtttgggtgctagaaaatttacctgcaaatattaatactccaacattcatgttccgaatgagttggaaaagcgtgta 1697457  T
Q  259 a--tatgagtcgtaacttggtgtgaatcagggttacatttatata 301  Q
    |  ||||||| |||||||||||||||||||||| |||||||||||    
T  1697458 aagtatgagtagtaacttggtgtgaatcagggtcacatttatata 1697502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 31155659 - 31155718
Alignment:
Q  1 ttacaaggaccaaaacttaaacggatcatatttgca-ggacgagtgcaatatttaagcct 59  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  31155659 ttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagcct 31155718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 39760482 - 39760423
Alignment:
Q  1 ttacaaggaccaaaacttaaacggatcatatttgca-ggacgagtgcaatatttaagcct 59  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||    
T  39760482 ttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcct 39760423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 31155428 - 31155364
Alignment:
Q  1 ttacaaggaccaaaacttaaacggatcatatttgca-ggacgagtgcaatatttaagccttttat 64  Q
    |||||||||| |||| ||||||||  |||||||||| |||||||| |||||||||||||||||||    
T  31155428 ttacaaggacaaaaaattaaacgggccatatttgcatggacgagtacaatatttaagccttttat 31155364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 31156210 - 31156269
Alignment:
Q  1 ttacaaggaccaaaacttaaacggatcatatttgca-ggacgagtgcaatatttaagcct 59  Q
    ||||||| ||||||||||||||||| |||||||| | |||||| ||||||||||||||||    
T  31156210 ttacaagaaccaaaacttaaacggaccatatttgtagggacgaatgcaatatttaagcct 31156269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 31155951 - 31155893
Alignment:
Q  1 ttacaaggaccaaaacttaaacggatcatatttgca-ggacgagtgcaatatttaagcc 58  Q
    |||||||||||||||||||||||  ||||||||||| |||||||  |||||||||||||    
T  31155951 ttacaaggaccaaaacttaaacgtgtcatatttgcagggacgagatcaatatttaagcc 31155893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 39761631 - 39761689
Alignment:
Q  1 ttacaaggaccaaaacttaaacggatcatatttgca-ggacgagtgcaatatttaagcc 58  Q
    |||||||||||||||||||||||   |||||||||| |||| |||||||||||||||||    
T  39761631 ttacaaggaccaaaacttaaacgtgccatatttgcagggacaagtgcaatatttaagcc 39761689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 8e-21; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 3068832 - 3068769
Alignment:
Q  1 ttacaaggaccaaaacttaaacggatcatatttgca-ggacgagtgcaatatttaagcctttta 63  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  3068832 ttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcctttta 3068769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 3305677 - 3305612
Alignment:
Q  1 ttacaaggaccaaaacttaaacggatcatatttgca-ggacgagtgcaatatttaagccttttatt 65  Q
    ||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||    
T  3305677 ttacaaggaccaaaacttaaacggaccatatttgcagggacgagttcaatatttaagccttttatt 3305612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 3069091 - 3069151
Alignment:
Q  1 ttacaaggaccaaaacttaaacggatcatatttgca-ggacgagtgcaatatttaagcctt 60  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  3069091 ttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcctt 3069151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 3305936 - 3305995
Alignment:
Q  1 ttacaaggaccaaaacttaaacggatcatatttgcagg-acgagtgcaatatttaagcct 59  Q
    |||||||||  |||||||||||||  |||||||||||| |||||||||||||||||||||    
T  3305936 ttacaaggaagaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 3305995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 8e-21; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 16368917 - 16368984
Alignment:
Q  1 ttacaaggaccaaaacttaaacggatcatatttgca-ggacgagtgcaatatttaagccttttattaa 67  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  16368917 ttacacggaccaaaacttaaacggatcatatttgcagggacgagtgcaatatttaagcctattattaa 16368984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 6851307 - 6851248
Alignment:
Q  1 ttacaaggaccaaaacttaaacggatcatatttgca-ggacgagtgcaatatttaagcct 59  Q
    |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  6851307 ttacaaagaccaaaacttaaacggatcatatttgcatggacgagtgcaatatttaagcct 6851248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 16766347 - 16766288
Alignment:
Q  1 ttacaaggaccaaaacttaaacggatcatatttgca-ggacgagtgcaatatttaagcct 59  Q
    |||||| |||||||||||||| || ||||||||||| |||||||||||||||||||||||    
T  16766347 ttacaaagaccaaaacttaaatgggtcatatttgcagggacgagtgcaatatttaagcct 16766288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 29847003 - 29847057
Alignment:
Q  8 gaccaaaacttaaacggatcatatttgcagg-acgagtgcaatatttaagccttt 61  Q
    |||||||||||||||||  |||||||||||| |||||||||||||||||||||||    
T  29847003 gaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagccttt 29847057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 20582694 - 20582638
Alignment:
Q  1 ttacaaggaccaaaacttaaacggatcatatttgca-ggacgagtgcaatatttaag 56  Q
    |||||||||||||||||||||||||  ||||||| | ||||||||||||||||||||    
T  20582694 ttacaaggaccaaaacttaaacggactatatttgtagggacgagtgcaatatttaag 20582638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 33746770 - 33746710
Alignment:
Q  1 ttacaaggaccaaaacttaaacggatcatatttgcagg-acgagtgcaatatttaagcctt 60  Q
    ||||| |||| |||||||||||||  |||||||||||| ||||||||||||||||||||||    
T  33746770 ttacatggacgaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcctt 33746710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 11246368 - 11246427
Alignment:
Q  1 ttacaaggaccaaaacttaaacggatcatatttgca-ggacgagtgcaatatttaagcct 59  Q
    ||||||||||  |||||||||| ||||||||||||| ||| |||||||||||||||||||    
T  11246368 ttacaaggactcaaacttaaacagatcatatttgcagggatgagtgcaatatttaagcct 11246427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 33746968 - 33747027
Alignment:
Q  1 ttacaaggaccaaaacttaaacggatcatatttgca-ggacgagtgcaatatttaagcct 59  Q
    |||||||||| |||||||||||||  |||||||||| ||||| |||||||||||||||||    
T  33746968 ttacaaggacgaaaacttaaacgggccatatttgcagggacgggtgcaatatttaagcct 33747027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 16766577 - 16766635
Alignment:
Q  1 ttacaaggaccaaaacttaaacggatcatatttgca-ggacgagtgcaatatttaagcc 58  Q
    |||||||||||||||| |||||||  |||||||||| |||||| |||||||||||||||    
T  16766577 ttacaaggaccaaaacataaacgggccatatttgcagggacgattgcaatatttaagcc 16766635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 29846847 - 29846786
Alignment:
Q  1 ttacaaggaccaaaacttaaacggatcatatttgcagg-acgagtgcaatatttaagccttt 61  Q
    ||||| |||| |||||||||| |   |||||||||||| |||||||||||||||||||||||    
T  29846847 ttacagggacgaaaacttaaatgacccatatttgcagggacgagtgcaatatttaagccttt 29846786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 16368699 - 16368639
Alignment:
Q  1 ttacaaggaccaaaacttaaacggatcatatttgcagg-acgagtgcaatatttaagcctt 60  Q
    ||||| |||| |||||||||||    |||||||||||| ||||||||||||||||||||||    
T  16368699 ttacagggacgaaaacttaaacatgccatatttgcagggacgagtgcaatatttaagcctt 16368639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 23254694 - 23254753
Alignment:
Q  1 ttacaaggaccaaaacttaaacggatcatatttgca-ggacgagtgcaatatttaagcct 59  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||    
T  23254694 ttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcct 23254753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 23254435 - 23254377
Alignment:
Q  1 ttacaaggaccaaaacttaaacggatcatatttgca-ggacgagtgcaatatttaagcc 58  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  23254435 ttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagcc 23254377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 41315957 - 41315897
Alignment:
Q  1 ttacaaggaccaaaacttaaacggatcatatttgca-ggacgagtgcaatatttaagcctt 60  Q
    ||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||    
T  41315957 ttacaaggaccaaaacttaaacggaccatatttgcagggacgaatgcaatatttaagcctt 41315897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 41316215 - 41316274
Alignment:
Q  1 ttacaaggaccaaaacttaaacggatcatatttgca-ggacgagtgcaatatttaagcct 59  Q
    ||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||||    
T  41316215 ttacaaggaccaaaacttaaacgaaccatatttgcagggacgagtgcaatatttaagcct 41316274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 15874286 - 15874229
Alignment:
Q  1 ttacaaggaccaaaacttaaacggatcatatttgca-ggacgagtgcaatatttaagc 57  Q
    ||||||||||||||||||||||||  |||||||||| |||||||||||||||||||||    
T  15874286 ttacaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagc 15874229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 42305963 - 42305902
Alignment:
Q  1 ttacaaggaccaaaacttaaacggatcatatttgca-ggacgagtgcaatatttaagccttt 61  Q
    |||| ||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||    
T  42305963 ttacgaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagccttt 42305902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 38484519 - 38484460
Alignment:
Q  1 ttacaaggaccaaaacttaaacggatcatatttgcag-gacgagtgcaatatttaagcct 59  Q
    ||||||||||||||||||||||||  ||||||| ||| ||||||||||||||||||||||    
T  38484519 ttacaaggaccaaaacttaaacgggccatatttacagagacgagtgcaatatttaagcct 38484460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 38485185 - 38485243
Alignment:
Q  1 ttacaaggaccaaaacttaaacggatcatatttgca-ggacgagtgcaatatttaagcc 58  Q
    ||||| |||| ||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  38485185 ttacagggacgaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagcc 38485243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 15874545 - 15874605
Alignment:
Q  1 ttacaaggaccaaaacttaaacggatcatatttgca-ggacgagtgcaatatttaagcctt 60  Q
    |||||| |||||||||||||||||  |||||||||| |||||||||||||| |||||||||    
T  15874545 ttacaaagaccaaaacttaaacggggcatatttgcagggacgagtgcaatacttaagcctt 15874605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 42306221 - 42306280
Alignment:
Q  1 ttacaaggaccaaaacttaaacggatcatatttgca-ggacgagtgcaatatttaagcct 59  Q
    ||||||||||||||||||||||||  |||||||| | |||||||| ||||||||||||||    
T  42306221 ttacaaggaccaaaacttaaacgggccatatttggagggacgagttcaatatttaagcct 42306280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 55893491 - 55893548
Alignment:
Q  4 caaggaccaaaacttaaacggatcatatttgcagg-acgagtgcaatatttaagcctt 60  Q
    ||||||||||||||||||||   ||||||| |||| ||||||||||||||||||||||    
T  55893491 caaggaccaaaacttaaacgagccatatttacagggacgagtgcaatatttaagcctt 55893548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 20878751 - 20878692
Alignment:
Q  1 ttacaaggaccaaaacttaaacggatcatatttgca-ggacgagtgcaatatttaagcct 59  Q
    ||||||||||||||||||||||||  |||||||||| ||| ||||| ||| |||||||||    
T  20878751 ttacaaggaccaaaacttaaacgggccatatttgcagggatgagtggaatgtttaagcct 20878692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 55893264 - 55893213
Alignment:
Q  9 accaaaacttaaacggatcatatttgcag-gacgagtgcaatatttaagcct 59  Q
    ||||||||||||||||  ||||||||||| |||| |||||||||||||||||    
T  55893264 accaaaacttaaacgggccatatttgcagagacgggtgcaatatttaagcct 55893213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 33794492 - 33794433
Alignment:
Q  1 ttacaaggaccaaaacttaaacggatcatatttgca-ggacgagtgcaatatttaagcct 59  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||    
T  33794492 ttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcct 33794433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 40560776 - 40560834
Alignment:
Q  1 ttacaaggaccaaaacttaaacggatcatatttgca-ggacgagtgcaatatttaagcc 58  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  40560776 ttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcc 40560834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 5048321 - 5048381
Alignment:
Q  1 ttacaaggaccaaaacttaaacggatcatatttgca-ggacgagtgcaatatttaagcctt 60  Q
    |||| |||||||||||||||||||  |||||||||| ||||||||||||||||||||||||    
T  5048321 ttacgaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcctt 5048381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 20124713 - 20124653
Alignment:
Q  1 ttacaaggaccaaaacttaaacggatcatatttgca-ggacgagtgcaatatttaagcctt 60  Q
    |||||| |||||||||||||||||| ||||||| || ||||||||||||||||||||||||    
T  20124713 ttacaaagaccaaaacttaaacggaccatatttacagggacgagtgcaatatttaagcctt 20124653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 31724411 - 31724351
Alignment:
Q  1 ttacaaggaccaaaacttaaacggatcatatttgca-ggacgagtgcaatatttaagcctt 60  Q
    ||||||||||||||| ||||||||  |||||||||| ||||||||||||||||||||||||    
T  31724411 ttacaaggaccaaaatttaaacgggccatatttgcatggacgagtgcaatatttaagcctt 31724351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 2439828 - 2439769
Alignment:
Q  1 ttacaaggaccaaaacttaaacggatcatatttgca-ggacgagtgcaatatttaagcct 59  Q
    |||| |||||||||||||||||||  |||||||||| |||||||||||||||||||||||    
T  2439828 ttacgaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 2439769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 5048062 - 5048003
Alignment:
Q  1 ttacaaggaccaaaacttaaacggatcatatttgc-aggacgagtgcaatatttaagcct 59  Q
    ||||||| ||||||||||||||||| ||||||| | ||||||||||||||||||||||||    
T  5048062 ttacaagaaccaaaacttaaacggaccatatttacaaggacgagtgcaatatttaagcct 5048003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 14783793 - 14783734
Alignment:
Q  1 ttacaaggaccaaaacttaaacggatcatatttgca-ggacgagtgcaatatttaagcct 59  Q
    ||||||||||||||||||||||||  |||||||||| |||| ||||||||||||||||||    
T  14783793 ttacaaggaccaaaacttaaacgggccatatttgcagggacaagtgcaatatttaagcct 14783734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 14784038 - 14784097
Alignment:
Q  1 ttacaaggaccaaaacttaaacggatcatatttgca-ggacgagtgcaatatttaagcct 59  Q
    ||||| |||| ||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  14784038 ttacagggacgaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagcct 14784097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 7 - 62
Target Start/End: Original strand, 31724671 - 31724727
Alignment:
Q  7 ggaccaaaacttaaacggatcatatttgca-ggacgagtgcaatatttaagcctttt 62  Q
    |||| |||||||||||||  |||||||||| ||||||||||||||||||||||||||    
T  31724671 ggacaaaaacttaaacgggccatatttgcaaggacgagtgcaatatttaagcctttt 31724727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 2440087 - 2440137
Alignment:
Q  1 ttacaaggaccaaaacttaaacggatcatatttgc-aggacgagtgcaata 50  Q
    ||||||| ||||||||||||||||| ||||||| | |||||||||||||||    
T  2440087 ttacaagaaccaaaacttaaacggaccatatttacaaggacgagtgcaata 2440137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 8e-18; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 34492546 - 34492608
Alignment:
Q  1 ttacaaggaccaaaacttaaacggatcatatttgcagg-acgagtgcaatatttaagcctttt 62  Q
    |||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||    
T  34492546 ttacaaggaccaaaacttaaacagaccatatttgcaggaacgagtgcaatatttaagcctttt 34492608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 52331465 - 52331404
Alignment:
Q  1 ttacaaggaccaaaacttaaacggatcatatttgca-ggacgagtgcaatatttaagccttt 61  Q
    ||||||||||||||||||||||||  |||||||||| |||||||||||||||||||||||||    
T  52331465 ttacaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagccttt 52331404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 7710019 - 7710078
Alignment:
Q  1 ttacaaggaccaaaacttaaacggatcatatttgca-ggacgagtgcaatatttaagcct 59  Q
    |||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||    
T  7710019 ttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcct 7710078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 13618601 - 13618658
Alignment:
Q  1 ttacaaggaccaaaacttaaacggatcatatttgca-ggacgagtgcaatatttaagc 57  Q
    ||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||    
T  13618601 ttacaaggaccaaaacttaaacggaccatatttgcagggacgaatgcaatatttaagc 13618658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 52331724 - 52331783
Alignment:
Q  1 ttacaaggaccaaaacttaaacggatcatatttgca-ggacgagtgcaatatttaagcct 59  Q
    ||||||||| ||||||||||||||  |||||||||| |||||||||||||||||||||||    
T  52331724 ttacaaggatcaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 52331783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 7709758 - 7709700
Alignment:
Q  1 ttacaaggaccaaaacttaaacggatcatatttgca-ggacgagtgcaatatttaagcc 58  Q
    ||||||||||||||||||||||||  |||||||||| |||||||| |||||||||||||    
T  7709758 ttacaaggaccaaaacttaaacgggccatatttgcagggacgagttcaatatttaagcc 7709700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 13618314 - 13618252
Alignment:
Q  1 ttacaaggaccaaaacttaaacggatcatatttgca-ggacgagtgcaatatttaagcctttt 62  Q
    ||||| |||| ||||||||||||| ||||||||||| ||| ||||||||||||||||||||||    
T  13618314 ttacagggactaaaacttaaacgggtcatatttgcagggaagagtgcaatatttaagcctttt 13618252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 13618418 - 13618475
Alignment:
Q  1 ttacaaggaccaaaacttaaacggatcatatttgca-ggacgagtgcaatatttaagc 57  Q
    ||||||||||||||||||||||||  |||||||||| |||||| ||||||||||||||    
T  13618418 ttacaaggaccaaaacttaaacgggccatatttgcagggacgaatgcaatatttaagc 13618475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 34492295 - 34492237
Alignment:
Q  1 ttacaaggaccaaaacttaaacggatcatatttgcagg-acgagtgcaatatttaagcc 58  Q
    ||||| |||| |||||||||||||  |||||||||||| ||||||||||||||||||||    
T  34492295 ttacacggacgaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcc 34492237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 37646974 - 37647032
Alignment:
Q  1 ttacaaggaccaaaacttaaacggatcatatttgcag-gacgagtgcaatatttaagcc 58  Q
    |||||||||||||||||||||||   |||||||||||  |||| |||||||||||||||    
T  37646974 ttacaaggaccaaaacttaaacgagccatatttgcagaaacgaatgcaatatttaagcc 37647032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 37873475 - 37873414
Alignment:
Q  1 ttacaaggaccaaaacttaaacggatcatatttgca-ggacgagtgcaatatttaagccttt 61  Q
    ||||||||||||||||||||||||  |||||||||| |||||||||||||||||||||||||    
T  37873475 ttacaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagccttt 37873414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 9402618 - 9402563
Alignment:
Q  1 ttacaaggaccaaaacttaaacggatcatatttgca-ggacgagtgcaatatttaa 55  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  9402618 ttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaa 9402563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 32793100 - 32793163
Alignment:
Q  1 ttacaaggaccaaaacttaaacggatcatatttgcagg-acgagtgcaatatttaagcctttta 63  Q
    ||||||||||||||||||||||||   ||||||||||| |||||||||||||||||||||||||    
T  32793100 ttacaaggaccaaaacttaaacgggctatatttgcagggacgagtgcaatatttaagcctttta 32793163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 37879167 - 37879226
Alignment:
Q  1 ttacaaggaccaaaacttaaacggatcatatttgca-ggacgagtgcaatatttaagcct 59  Q
    |||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||    
T  37879167 ttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtacaatatttaagcct 37879226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 24825617 - 24825555
Alignment:
Q  1 ttacaaggaccaaaacttaaacggatcatatttgcagg-acgagtgcaatatttaagcctttt 62  Q
    |||||||||||||||||||||||   |||||||||||| ||||||||||||||||||||||||    
T  24825617 ttacaaggaccaaaacttaaacgagccatatttgcagggacgagtgcaatatttaagcctttt 24825555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 32792841 - 32792783
Alignment:
Q  1 ttacaaggaccaaaacttaaacggatcatatttgc-aggacgagtgcaatatttaagcc 58  Q
    ||||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||    
T  32792841 ttacaaggaccaaaacttaaacgggccatatttgcaaggacgagtgcaatatttaagcc 32792783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 24825880 - 24825935
Alignment:
Q  4 caaggaccaaaacttaaacggatcatatttgca-ggacgagtgcaatatttaagcc 58  Q
    |||||||||||||||||||||  |||||||||| ||||||||||||||||||||||    
T  24825880 caaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcc 24825935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 11324365 - 11324426
Alignment:
Q  1 ttacaaggaccaaaacttaaacggatcatatttgca-ggacgagtgcaatatttaagccttt 61  Q
    |||||||||||||||||||||||   |||||||||| |||||| ||||||||||||||||||    
T  11324365 ttacaaggaccaaaacttaaacgagccatatttgcagggacgaatgcaatatttaagccttt 11324426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 4732000 - 4732061
Alignment:
Q  1 ttacaaggaccaaaacttaaacggatcatatttgca-ggacgagtgcaatatttaagccttt 61  Q
    ||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||    
T  4732000 ttacaaggaccaaaacttaaacggaccatatttgcagggatgagtgcaatatttaagccttt 4732061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 12414154 - 12414220
Alignment:
Q  1 ttacaaggaccaaaacttaaacggatcatatttgca-ggacgagtgcaatatttaagccttttatta 66  Q
    |||||||||  |||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||    
T  12414154 ttacaaggatgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcctttaatta 12414220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 12426214 - 12426280
Alignment:
Q  1 ttacaaggaccaaaacttaaacggatcatatttgca-ggacgagtgcaatatttaagccttttatta 66  Q
    |||||||||  |||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||    
T  12426214 ttacaaggatgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcctttaatta 12426280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 4731773 - 4731715
Alignment:
Q  1 ttacaaggaccaaaacttaaacggatcatatttgca-ggacgagtgcaatatttaagcc 58  Q
    |||||||||||||| |||||||||  |||||||||| ||||||||||||||||||||||    
T  4731773 ttacaaggaccaaatcttaaacgggccatatttgcagggacgagtgcaatatttaagcc 4731715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 59
Target Start/End: Complemental strand, 12413890 - 12413837
Alignment:
Q  7 ggaccaaaacttaaacggatcatatttgca-ggacgagtgcaatatttaagcct 59  Q
    |||| |||||||||||||  |||||||||| |||| ||||||||||||||||||    
T  12413890 ggacgaaaacttaaacgggccatatttgcagggacaagtgcaatatttaagcct 12413837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 59
Target Start/End: Complemental strand, 12425950 - 12425897
Alignment:
Q  7 ggaccaaaacttaaacggatcatatttgca-ggacgagtgcaatatttaagcct 59  Q
    |||| |||||||||||||  |||||||||| |||| ||||||||||||||||||    
T  12425950 ggacgaaaacttaaacgggccatatttgcagggacaagtgcaatatttaagcct 12425897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 7072 - 7016
Alignment:
Q  5 aaggaccaaaacttaaacggatcatatttgcagg-acgagtgcaatatttaagcctt 60  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  7072 aaggaccaaaacttaaacggaccatatttgcaggaacgagtgcaatatttaagcctt 7016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 7270 - 7328
Alignment:
Q  1 ttacaaggaccaaaacttaaacggatcatatttgca-ggacgagtgcaatatttaagcc 58  Q
    ||||||||||||||||||||||||  |||||||||| |||||| | |||||||||||||    
T  7270 ttacaaggaccaaaacttaaacgggccatatttgcagggacgaatccaatatttaagcc 7328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 11012 - 10951
Alignment:
Q  1 ttacaaggaccaaaacttaaacggatcatatttgca-ggacgagtgcaatatttaagccttt 61  Q
    ||||||||||||||| ||||||||  |||||||||| |||||||||||||||||||||||||    
T  11012 ttacaaggaccaaaatttaaacgggccatatttgcagggacgagtgcaatatttaagccttt 10951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 11372 - 11431
Alignment:
Q  1 ttacaaggaccaaaacttaaacggatcatatttgca-ggacgagtgcaatatttaagcct 59  Q
    ||||||||||||||||||||||||  ||||||| || |||||||||||||||||||||||    
T  11372 ttacaaggaccaaaacttaaacgggccatatttacagggacgagtgcaatatttaagcct 11431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 33233 - 33293
Alignment:
Q  1 ttacaaggaccaaaacttaaacggatcatatttgca-ggacgagtgcaatatttaagcctt 60  Q
    |||||||||||||||| |||||||| |||||||||| ||||||||||||||||||| ||||    
T  33233 ttacaaggaccaaaacataaacggaccatatttgcagggacgagtgcaatatttaaacctt 33293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1408 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 1798 - 1745
Alignment:
Q  5 aaggaccaaaacttaaacggatcatatttgca-ggacgagtgcaatatttaagc 57  Q
    ||||||||||||||||||||  |||||||||| |||||||||||||||||||||    
T  1798 aaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagc 1745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 7544 - 7491
Alignment:
Q  5 aaggaccaaaacttaaacggatcatatttgca-ggacgagtgcaatatttaagc 57  Q
    ||||||||||||||||||||  |||||||||| |||||||||||||||||||||    
T  7544 aaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagc 7491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 7792 - 7849
Alignment:
Q  1 ttacaaggaccaaaacttaaacggatcatatttgca-ggacgagtgcaatatttaagc 57  Q
    |||||||||||||||||||||||   |||||||||| |||||||||||||||||||||    
T  7792 ttacaaggaccaaaacttaaacgtgccatatttgcagggacgagtgcaatatttaagc 7849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University