View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3363_high_23 (Length: 280)
Name: NF3363_high_23
Description: NF3363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3363_high_23 |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 18 - 266
Target Start/End: Complemental strand, 34701350 - 34701102
Alignment:
| Q |
18 |
atgtaccactgtagtttaaagagcatattcaggaatgagaatgacatgaatttacgttacttgaagtcgacacaatgttttattaatataacctttgtgt |
117 |
Q |
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| T |
34701350 |
atgtaccactgtagtttaaagagcatattcaggaatgagaatgacatgaatttacgttacttgaagtcgacacaatgttttattaatataacctttgtgt |
34701251 |
T |
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| Q |
118 |
gtttcgtaacttttaaatttgtaatcatcgcaatcactatagcttaattattctcacgggttctttcctgatttgtcctatttacttagatttcatccca |
217 |
Q |
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| T |
34701250 |
gtttcgtaacttttaaatttgtaatcatcgcaatcactatagcttaattattctcacgggttctttcctgatttgtcctatttacttagatttcatccca |
34701151 |
T |
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| Q |
218 |
atctagccagcaaacaaaattttgtatatatccagttgctgtttcacat |
266 |
Q |
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| T |
34701150 |
atctagccagcaaacaaaattttgtatatatccagttgctgtttcacat |
34701102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 100
Target Start/End: Original strand, 171919 - 172002
Alignment:
| Q |
18 |
atgtaccactgtagtttaaagagcatattcaggaatgagaatgacatgaa-tttacgttacttgaagtcgacacaatgttttat |
100 |
Q |
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| T |
171919 |
atgtaccactgtagtttaaagagcatattcagtaatgagaatgacatgaattttacattacttgaagccaacactatgttttat |
172002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 14645372 - 14645289
Alignment:
| Q |
18 |
atgtaccactgtagtttaaagagcatattcaggaatgagaatgacatgaa-tttacgttacttgaagtcgacacaatgttttat |
100 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||| | |||| ||||||||| |
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| T |
14645372 |
atgtaccactgtagtttaaagagcatattcagtaatgagaatgacatgaattttacattacttgaagccaacactatgttttat |
14645289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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