View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3363_high_24 (Length: 276)
Name: NF3363_high_24
Description: NF3363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3363_high_24 |
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Alignment Details
Target: chr8 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 107 - 261
Target Start/End: Original strand, 36675754 - 36675913
Alignment:
| Q |
107 |
tacgacaattgtgtcgcaacatttgcacgaatagctttatcacatgtatatactcatacctcgggctgtttaagaattttttgacac-aagtaaaatata |
205 |
Q |
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| T |
36675754 |
tacgacaattgtgtcgcaacatttgcacgaatagctttatcacatgtatatactcataactcgggctgtttaagaattttttgacacaaagtaaaatata |
36675853 |
T |
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| Q |
206 |
atataaactaaa----tatttatttatttattttacaatatgaattgtattgtctttatt |
261 |
Q |
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|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
36675854 |
atataaactaaatatgtatttatttattcattttacaatatgaattgtattgtctttatt |
36675913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 104; Significance: 7e-52; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 110 - 213
Target Start/End: Complemental strand, 45954162 - 45954059
Alignment:
| Q |
110 |
gacaattgtgtcgcaacatttgcacgaatagctttatcacatgtatatactcatacctcgggctgtttaagaattttttgacacaagtaaaatataatat |
209 |
Q |
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| T |
45954162 |
gacaattgtgtcgcaacatttgcacgaatagctttatcacatgtatatactcatacctcgggctgtttaagaattttttgacacaagtaaaatataatat |
45954063 |
T |
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| Q |
210 |
aaac |
213 |
Q |
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|||| |
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| T |
45954062 |
aaac |
45954059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 205 - 261
Target Start/End: Complemental strand, 45953651 - 45953591
Alignment:
| Q |
205 |
aatataaactaaatatttatttattt----attttacaatatgaattgtattgtctttatt |
261 |
Q |
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| T |
45953651 |
aatataaactaaatatttatttatttatttattttacaatatgaattgtattgtctttatt |
45953591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 15127427 - 15127489
Alignment:
| Q |
16 |
attgaccaattaaataatacattagttttgaattgaccatctaacatatatatacttttcctt |
78 |
Q |
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| T |
15127427 |
attgaccaattaaataatacattagttttgaattgaccatctaacatatatatacttttcctt |
15127489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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