View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3363_high_30 (Length: 250)
Name: NF3363_high_30
Description: NF3363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3363_high_30 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 129; Significance: 7e-67; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 101 - 250
Target Start/End: Original strand, 23430316 - 23430466
Alignment:
| Q |
101 |
gttgacctctaattttataggtgtgagttaatctcctaacaaactttgacaccagacaatcctggtt--ggcattcatttttcatctatatataaagcga |
198 |
Q |
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| T |
23430316 |
gttgacctctaattttataggtgtgagttaatctcctaacaaactttgacaccagacaatcctggttggggcattcatttttcatctatatataaaacga |
23430415 |
T |
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| Q |
199 |
gaatcatacattaattaaatccatttttcttctacaataaagcttattatta |
250 |
Q |
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| T |
23430416 |
gaatcatacattaattaaatcca-ttttcttctacaataaagcttattatta |
23430466 |
T |
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Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 101 - 246
Target Start/End: Original strand, 23438369 - 23438519
Alignment:
| Q |
101 |
gttgacctctaattttataggtgtgagttaatctcctaacaaactttgacaccagacaatcctggttggc----attcatttttcatctatatataaagc |
196 |
Q |
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|||||| ||||||||||||| ||||||||||||| |||||||||||||| |||| |||| |||||||| ||||||||||| |||||||||||||| |
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| T |
23438369 |
gttgacttctaattttatagatgtgagttaatct---aacaaactttgacagcagagaatcatggttggcgtccattcatttttcttctatatataaagc |
23438465 |
T |
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| Q |
197 |
gagaatcatacattaattaa----atccatttttcttctacaataaagcttatt |
246 |
Q |
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||||| | ||||| |||| |||||||||||||| | ||||||||||||| |
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| T |
23438466 |
aagaattagacattcattactcacatccatttttcttcaataataaagcttatt |
23438519 |
T |
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