View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3363_high_35 (Length: 243)
Name: NF3363_high_35
Description: NF3363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3363_high_35 |
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Alignment Details
Target: chr6 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 4652035 - 4651858
Alignment:
| Q |
1 |
tttttgtatatggcacattagtgctaaatttagtggttggtttacttcaattcttcgaaatcgatatttctcataatgtgcttatttttataagctttac |
100 |
Q |
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|||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
4652035 |
tttttgtatatggcacattactgctaaattgagtggttggtttacttcaattcttcgaaatcgatatttctcataatgtgcttatttttataagctctac |
4651936 |
T |
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| Q |
101 |
cagcttgacaatattgatgattttgaataagaatggattataattgtttccaagtacaaactagaagcaaataagcac |
178 |
Q |
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| T |
4651935 |
cagcttgacaatattgatgattttgaagaagaatggattataattgtttccaagtacaaactagaagcaaacaagcac |
4651858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 4651882 - 4651836
Alignment:
| Q |
179 |
gtacaaactagaagcaaacaagcacataaaaggcttgtatgaagtta |
225 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4651882 |
gtacaaactagaagcaaacaagcacataaaaggcttgtatgaagtta |
4651836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 16149428 - 16149251
Alignment:
| Q |
1 |
tttttgtatatggcacattagtgctaaatttagtggttggtttacttcaattcttcgaaatcgatatttctcataatgtgcttatttttataagctttac |
100 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||| |
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| T |
16149428 |
tttttgtatatggcacattactgctaaatttagtggttggtttacttcaattcttcgaaatagatatttctcatggtgtgctgatttttataagctttac |
16149329 |
T |
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| Q |
101 |
cagcttgacaatattgatgattttgaataagaatggattataattgtttccaagtacaaactagaagcaaataagcac |
178 |
Q |
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| T |
16149328 |
aagcttgacaatattgatgatttcgaagaagaatggattataattgtttccaagtacaatctagaagcaaataagcac |
16149251 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 16149275 - 16149229
Alignment:
| Q |
179 |
gtacaaactagaagcaaacaagcacataaaaggcttgtatgaagtta |
225 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||||||||||||||||| |
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| T |
16149275 |
gtacaatctagaagcaaataagcacataaaaggcttgtatgaagtta |
16149229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 23302633 - 23302810
Alignment:
| Q |
1 |
tttttgtatatggcacattagtgctaaatttagtggttggtttacttcaattcttcgaaatcgatatttctcataatgtgcttatttttataagctttac |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||| ||||| ||||||||||| |
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| T |
23302633 |
tttttgtatatggcacattactgctaaatttagtggttggattacttcaattcttcgaaatagatatttctcatggtgtgctgattttcataagctttac |
23302732 |
T |
|
| Q |
101 |
cagcttgacaatattgatgattttgaataagaatggattataattgtttccaagtacaaactagaagcaaataagcac |
178 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
23302733 |
aagcttgacaatattgatgattttgaagaagaatggattataattgtttccaagtacaatctagaagcaaataagcac |
23302810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 179 - 225
Target Start/End: Original strand, 23302786 - 23302832
Alignment:
| Q |
179 |
gtacaaactagaagcaaacaagcacataaaaggcttgtatgaagtta |
225 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
23302786 |
gtacaatctagaagcaaataagcacataaaaggcttgtatgaagtta |
23302832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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