View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3363_high_4 (Length: 516)
Name: NF3363_high_4
Description: NF3363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3363_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 481; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 18 - 502
Target Start/End: Complemental strand, 34607373 - 34606889
Alignment:
| Q |
18 |
ctgtgggattcaaccaaatatcttctagtttcttcaactcaccctgctgtaagagctgcaaaatagctttagaaacatctctggccaaaggagagccttt |
117 |
Q |
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| T |
34607373 |
ctgtgggattcaaccaaatatcttctagtttcttcaactcaccctgctgtaagagctgcaaaatagctttagaaacatctctggccaaaggagagccttt |
34607274 |
T |
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| Q |
118 |
ctggaacatctgtgtcatgagattgataagaaattaagggagatagatgaaatatgtaaagaatacaaattaagttgtaaaattcttgtcacttacaaat |
217 |
Q |
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| T |
34607273 |
ctggaacatctgtgtcatgagattgataagaaattaagggagatagatgaaatatgtaaagaatacaaattaagttgtaaaattcttgtcacttacaaat |
34607174 |
T |
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| Q |
218 |
ccaagtcctccaaatctagtggtaggtgtagaagcagagtaccccttgcagtatttactgatgtatactttctcataagggagttcaagaaaagcagcag |
317 |
Q |
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| T |
34607173 |
ccaagtcctccaaatctagtggtaggtgtagaagcagagtaccccttgcagtatttactgatgtatactttctcataagggagttcaagaaaagcagcag |
34607074 |
T |
|
| Q |
318 |
caattgagtagtttttgaatcccgggtcataattattttcattactaatgtttacgatgttctctggtttgaatttttcgacttccactaggtatgtcct |
417 |
Q |
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| T |
34607073 |
caattgagtagtttttgaatccagggtcataattattttcattactaatgtttacgatgttctctggtttgaatttttcgacttccactaggtatgtcct |
34606974 |
T |
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| Q |
418 |
aacaaatgaatctccatcacaaccaattttcatgtcgttcttcttcaaccactcaatgttggtgatatttgctcgcagttgttga |
502 |
Q |
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| T |
34606973 |
aacaaatgaatctccatcacaaccaattttcatgtcgttcttcttcaaccactcaatgttggtgatatttgctcgcagttgttga |
34606889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 363 - 476
Target Start/End: Original strand, 4487011 - 4487124
Alignment:
| Q |
363 |
taatgtttacgatgttctctggtttgaatttttcgacttccactaggtatgtcctaacaaatgaatctccatcacaaccaattttcatgtcgttcttctt |
462 |
Q |
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||||||||| ||| |||||||| ||||| ||||| |||| | ||||| | |||||||||||||| || || ||||||||||||||| ||| ||| ||||| |
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| T |
4487011 |
taatgtttatgatattctctggcttgaacttttcaactttctctaggaacgtcctaacaaatgagtcgccgtcacaaccaattttcttgttgttgttctt |
4487110 |
T |
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| Q |
463 |
caaccactcaatgt |
476 |
Q |
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| T |
4487111 |
cagccactgaatgt |
4487124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 208 - 315
Target Start/End: Original strand, 4486856 - 4486963
Alignment:
| Q |
208 |
acttacaaatccaagtcctccaaatctagtggtaggtgtagaagc-agagtaccccttgcagtatttactgatgtatactttctcataagggagttcaag |
306 |
Q |
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|||||||||||||| ||||||||||||||| |||| || ||||| || ||| | ||||||||||||||||| ||||||| ||||| ||||| ||||| |
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| T |
4486856 |
acttacaaatccaaatcctccaaatctagttctaggagt-gaagccagtgtatctcttgcagtatttactgacaaatactttttcatatgggagctcaag |
4486954 |
T |
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| Q |
307 |
aaaagcagc |
315 |
Q |
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||||||||| |
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| T |
4486955 |
aaaagcagc |
4486963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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