View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3363_high_5 (Length: 503)

Name: NF3363_high_5
Description: NF3363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3363_high_5
NF3363_high_5
[»] chr4 (4 HSPs)
chr4 (9-484)||(15555987-15556462)
chr4 (210-412)||(35162614-35162816)
chr4 (33-408)||(35155417-35155792)
chr4 (33-160)||(35162438-35162564)
[»] chr3 (27 HSPs)
chr3 (90-420)||(45883475-45883804)
chr3 (33-418)||(46479789-46480174)
chr3 (210-412)||(16025660-16025862)
chr3 (33-328)||(46473928-46474223)
chr3 (92-328)||(5160332-5160568)
chr3 (33-328)||(46484047-46484342)
chr3 (92-412)||(47413943-47414260)
chr3 (102-412)||(46498016-46498326)
chr3 (216-412)||(5156427-5156626)
chr3 (210-328)||(46539173-46539291)
chr3 (210-412)||(46544648-46544850)
chr3 (250-410)||(47397057-47397217)
chr3 (210-296)||(46490885-46490971)
chr3 (35-136)||(46549010-46549111)
chr3 (87-328)||(51943943-51944184)
chr3 (222-412)||(46236538-46236731)
chr3 (214-412)||(46548750-46548948)
chr3 (351-412)||(46532224-46532285)
chr3 (198-295)||(4581246-4581343)
chr3 (198-295)||(4613703-4613800)
chr3 (452-484)||(46506922-46506954)
chr3 (35-174)||(46236782-46236921)
chr3 (205-328)||(46526256-46526379)
chr3 (277-328)||(46532162-46532213)
chr3 (93-172)||(46544531-46544610)
chr3 (210-328)||(46554015-46554133)
chr3 (360-412)||(46484366-46484418)
[»] chr8 (3 HSPs)
chr8 (92-410)||(9675445-9675763)
chr8 (33-410)||(9692467-9692844)
chr8 (205-406)||(21463943-21464144)
[»] chr2 (3 HSPs)
chr2 (199-412)||(20144794-20145007)
chr2 (199-412)||(20168767-20168980)
chr2 (199-410)||(20359304-20359515)
[»] chr7 (4 HSPs)
chr7 (216-397)||(16722332-16722513)
chr7 (216-397)||(17699346-17699527)
chr7 (34-130)||(17708273-17708369)
chr7 (34-130)||(17718097-17718193)


Alignment Details
Target: chr4 (Bit Score: 452; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 9 - 484
Target Start/End: Original strand, 15555987 - 15556462
Alignment:
Q  9 agcagagaggatcaatacattggtgcttttgatggtttcaaagtactttgtcttcattataaataaggccaatatgatcgccgattctctatctacttta 108  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  15555987 agcaaagaggatcaatatattggtgcttttgatggtttcaaagtactttgtcttcattataaacaaggccaatatgatcgccgattctctatctacttta 15556086  T
Q  109 ttcttccagatgcaaaagatggactctcggctttggttgaaaaggtggcttcagaatctgagttactacaccgtaagtttaatctttctaaagtcaaagt 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15556087 ttcttccagatgcaaaagatggactctcggctttggttgaaaaggtggcttcagaatctgagttactacaccgtaagtttaatctttctaaagtcaaagt 15556186  T
Q  209 tggtgacttcagaattccaaagttcaatatctcatttgggtttgaaacttctgatatgctgaaggacctaggagtggttttacctttctctcggggaggt 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  15556187 tggtgacttcagaattccaaagttcaatatctcatttgggtttgaaacttctgatatgctgaaggacctaggagtggttttacctttctctcccggaggt 15556286  T
Q  309 ttgactaaaatggtggactcacttgcgggtcaagacctgtttgtttctaacatattccaaaagtctttcatccaagtaaacgaagaaggcactgaagctg 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15556287 ttgactaaaatggtggactcacttgcgggtcaagacctgtttgtttctaacatattccaaaagtctttcatccaagtaaacgaagaaggcactgaagctg 15556386  T
Q  409 ctgctgcaacctatggtattatgacagcaatgggtataagccctcctcgactagactttgtagctgaccacccatt 484  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  15556387 ctgctgcaacctatggtattatgacagccatgggtataagccctcctcgactagactttgtagctgaccacccatt 15556462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 210 - 412
Target Start/End: Original strand, 35162614 - 35162816
Alignment:
Q  210 ggtgacttcagaattccaaagttcaatatctcatttgggtttgaaacttctgatatgctgaaggacctaggagtggttttacctttctctcggggaggtt 309  Q
    |||| ||||| ||||||||| |||||  | |||| |||| |||||||||||  | |||||||||| ||||||||| ||||||||||||||   |||||||    
T  35162614 ggtggcttcaaaattccaaaattcaaattttcatatgggcttgaaacttctcgtgtgctgaaggatctaggagtgattttacctttctcttctggaggtt 35162713  T
Q  310 tgactaaaatggtggactcacttgcgggtcaagacctgtttgtttctaacatattccaaaagtctttcatccaagtaaacgaagaaggcactgaagctgc 409  Q
    |||| |||||||||||||||||||  |||||| |||| || ||||| |||||||| || |||||||||||  ||||||| ||  ||||||| | ||||||    
T  35162714 tgacaaaaatggtggactcacttgaaggtcaaaaccttttagtttccaacatatttcacaagtctttcattgaagtaaatgagaaaggcaccgtagctgc 35162813  T
Q  410 tgc 412  Q
    |||    
T  35162814 tgc 35162816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 33 - 408
Target Start/End: Original strand, 35155417 - 35155792
Alignment:
Q  33 gcttttgatggtttcaaagtactttgtcttcattataaataaggccaatatgatcgccgattctctatctactttattcttccagatgcaaaagatggac 132  Q
    |||||||||||||| ||||| ||| ||||||  |||||  ||||  || |||| ||   ||||||||| ||| || |||||||| |||||||||||||||    
T  35155417 gcttttgatggttttaaagttcttcgtcttccgtataagcaaggaaaagatgagcggaaattctctatgtacatttttcttccaaatgcaaaagatggac 35155516  T
Q  133 tctcggctttggttgaaaaggtggcttcagaatctgagttactacaccgtaagtttaatctttctaaagtcaaagttggtgacttcagaattccaaagtt 232  Q
    | || ||||||||||| ||||||||||| |||| |||||| ||| | |  ||| ||  |  |   | ||    ||| |||| ||||| ||||||||  ||    
T  35155517 tatcagctttggttgagaaggtggcttctgaatttgagttgctagagcacaagcttccttataaaacagcgcgagtaggtggcttcaaaattccaagatt 35155616  T
Q  233 caatatctcatttgggtttgaaacttctgatatgctgaaggacctaggagtggttttacctttctctcggggaggtttgactaaaatggtggactcactt 332  Q
    |||  | |||| |  | ||||| ||||| |||||||||| |||||||||||| ||||||||||||||   || |||||||| |||||||||||||| |||    
T  35155617 caaattttcatctaagcttgaatcttctcatatgctgaaagacctaggagtgattttacctttctcttctgggggtttgacaaaaatggtggactctctt 35155716  T
Q  333 gcgggtcaagacctgtttgtttctaacatattccaaaagtctttcatccaagtaaacgaagaaggcactgaagctg 408  Q
    |  |||||| | || |  |||   |||||||| || |||| ||| ||  ||||||||||| |||||||| ||||||    
T  35155717 gaaggtcaaaatctctccgttagcaacatatttcagaagtgttttattgaagtaaacgaaaaaggcactaaagctg 35155792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 33 - 160
Target Start/End: Original strand, 35162438 - 35162564
Alignment:
Q  33 gcttttgatggtttcaaagtactttgtcttcattataaataaggccaatatgatcgccgattctctatctactttattcttccagatgcaaaagatggac 132  Q
    |||||||||||||| ||||| ||| |||||| ||||||  ||||  || |||| ||   ||||||||| ||| || |||||||| ||||||||||||| |    
T  35162438 gcttttgatggttttaaagttcttcgtcttccttataagcaaggaaaagatgagcggaaattctctatgtacatt-ttcttccaaatgcaaaagatggcc 35162536  T
Q  133 tctcggctttggttgaaaaggtggcttc 160  Q
    | || ||||||||||| |||||||||||    
T  35162537 tgtcagctttggttgagaaggtggcttc 35162564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 116; Significance: 8e-59; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 90 - 420
Target Start/End: Complemental strand, 45883804 - 45883475
Alignment:
Q  90 cgattctctatctactttattcttccagatgcaaaagatggactctcggctttggttgaaaaggtggcttcagaatctgagttactacaccgtaa--gtt 187  Q
    ||||||||||| |||||| |||||||| |||||||||||||||| || |||||||| || ||||||||||| ||||||   ||||||||||  ||  | |    
T  45883804 cgattctctatgtacttttttcttccaaatgcaaaagatggactgtcagctttggtcgagaaggtggcttctgaatctacattactacaccacaaaagct 45883705  T
Q  188 taatctttctaaagtcaaagttggtgacttcagaattccaaagttcaatatctcatttgggtttgaaacttctgatatgctgaaggacctaggagtggtt 287  Q
    |  || ||||||||||||||| |||||||||||||||||||  |||||| | ||||||||| ||||||||||| ||||| |||||||  |||||||||||    
T  45883704 ttgtcattctaaagtcaaagtaggtgacttcagaattccaagattcaatgtttcatttgggcttgaaacttctaatatgttgaaggagttaggagtggtt 45883605  T
Q  288 ttacctttctctcggggaggtttgactaaaatggtggactcacttgcgggtcaagacctgtttgtttctaacatattccaaaagtctttcatccaagtaa 387  Q
    | |||||||||||| ||| ||||||| |||||||||||||    | |   ||||||||| | | ||||| |||| || ||  ||||||||||  |||| |    
T  45883604 tcacctttctctcgtggaagtttgacaaaaatggtggact---atccaaatcaagacctttatatttctcacatttttcactagtctttcattgaagtta 45883508  T
Q  388 acgaagaaggcactgaagctgctgctgcaacct 420  Q
    | |||||||||||||||||||||||||||||||    
T  45883507 atgaagaaggcactgaagctgctgctgcaacct 45883475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 33 - 418
Target Start/End: Original strand, 46479789 - 46480174
Alignment:
Q  33 gcttttgatggtttcaaagtactttgtcttcattataaataaggccaatatgatcgccgattctctatctactttattcttccagatgcaaaagatggac 132  Q
    |||||||||||||| ||||| ||  |||||| ||||||  ||||| || || | || | |||| | || |||||| |||||||| |||||||||||||      
T  46479789 gcttttgatggttttaaagttctcggtcttccttataagcaaggcgaagataagcgtcaattcaccatgtacttttttcttccaaatgcaaaagatgggt 46479888  T
Q  133 tctcggctttggttgaaaaggtggcttcagaatctgagttactacaccgtaagtttaatctttctaaagtcaaagttggtgacttcagaattccaaagtt 232  Q
    |  | |||||||| |||||||||||||| ||||||||| |||| || |  ||| ||    ||  ||||||  |||| |||||||| || |||||||||||    
T  46479889 tggcagctttggtcgaaaaggtggcttctgaatctgagctactgcaacacaagcttccatttggtaaagtggaagtaggtgactttaggattccaaagtt 46479988  T
Q  233 caatatctcatttgggtttgaaacttctgatatgctgaaggacctaggagtggttttacctttctctcggggaggtttgactaaaatggtggactcactt 332  Q
    |||||| ||||||||  ||||||||||||||||||| ||||| ||||| |||||||||||||||||| | |||||| |||| || |||||| ||||        
T  46479989 caatatttcatttggacttgaaacttctgatatgctaaaggagctaggtgtggttttacctttctctggtggaggtctgacaaagatggtgaactcttca 46480088  T
Q  333 gcgggtcaagacctgtttgtttctaacatattccaaaagtctttcatccaagtaaacgaagaaggcactgaagctgctgctgcaac 418  Q
    |   ||||| |||| | |||||| || ||||| || |||||||||||  ||||||| ||||||||||||||||||||||| |||||    
T  46480089 gttagtcaaaacctttgtgtttccaatatatttcacaagtctttcattgaagtaaatgaagaaggcactgaagctgctgcggcaac 46480174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 210 - 412
Target Start/End: Original strand, 16025660 - 16025862
Alignment:
Q  210 ggtgacttcagaattccaaagttcaatatctcatttgggtttgaaacttctgatatgctgaaggacctaggagtggttttacctttctctcggggaggtt 309  Q
    ||||| ||||||||||||| ||||||  | ||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||  |||||||    
T  16025660 ggtgatttcagaattccaaggttcaaggtttcatttgggtttgaaacttctgatatgctgaaggagcttggagtagttttacctttctctcctggaggtt 16025759  T
Q  310 tgactaaaatggtggactcacttgcgggtcaagacctgtttgtttctaacatattccaaaagtctttcatccaagtaaacgaagaaggcactgaagctgc 409  Q
    |||| |||||||||||||  ||||    ||||||||| |||||||||  |||||| || || ||||||||| ||||||| |||||||| ||||||| |||    
T  16025760 tgacaaaaatggtggactttcttgaacatcaagacctctttgtttctcgcatatttcacaaatctttcatcgaagtaaatgaagaaggaactgaagttgc 16025859  T
Q  410 tgc 412  Q
    |||    
T  16025860 tgc 16025862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 33 - 328
Target Start/End: Original strand, 46473928 - 46474223
Alignment:
Q  33 gcttttgatggtttcaaagtactttgtcttcattataaataaggccaatatgatcgccgattctctatctactttattcttccagatgcaaaagatggac 132  Q
    |||||||||||||| ||||| ||| |||||| ||||||  ||||| || || | || || ||| |||| |||||| |||||||| ||||||||||||| |    
T  46473928 gcttttgatggttttaaagttcttggtcttccttataagcaaggcgaagataagcgtcgtttcactatgtacttttttcttccaaatgcaaaagatgggc 46474027  T
Q  133 tctcggctttggttgaaaaggtggcttcagaatctgagttactacaccgtaagtttaatctttctaaagtcaaagttggtgacttcagaattccaaagtt 232  Q
    |  |   ||||||||||||||||||||| |||||||| |||||||| |  ||| ||  | ||  ||||||  |||| |||||||| || |||||||||||    
T  46474028 ttccaagtttggttgaaaaggtggcttctgaatctgatttactacaacacaagcttccttttgataaagtggaagtaggtgactttaggattccaaagtt 46474127  T
Q  233 caatatctcatttgggtttgaaacttctgatatgctgaaggacctaggagtggttttacctttctctcggggaggtttgactaaaatggtggactc 328  Q
    |||||| ||||||||  |||||||||| |||||||| ||||| ||||| |||||||||||||||||| | | |||  |||| ||||||||||||||    
T  46474128 caatatttcatttggacttgaaacttccgatatgctaaaggagctaggtgtggttttacctttctctggtgaagggctgacaaaaatggtggactc 46474223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 92 - 328
Target Start/End: Original strand, 5160332 - 5160568
Alignment:
Q  92 attctctatctactttattcttccagatgcaaaagatggactctcggctttggttgaaaaggtggcttcagaatctgagttactacaccgtaagtttaat 191  Q
    ||||||||| ||| || | |||||| |||||||||||||  | ||| |||||||| | ||||||||||| |||||||||||||||||||  | |||| ||    
T  5160332 attctctatgtacattttccttccaaatgcaaaagatggcttgtcgactttggttaagaaggtggcttctgaatctgagttactacaccacaggtttcat 5160431  T
Q  192 ctttctaaagtcaaagttggtgacttcagaattccaaagttcaatatctcatttgggtttgaaacttctgatatgctgaaggacctaggagtggttttac 291  Q
    ||| || |||   |||| ||||| |||||||||||||  ||||| || ||||||| | |||||||||||||||||||||||||  ||||||||  |||||    
T  5160432 cttcctgaagaagaagtaggtgaattcagaattccaagattcaaaatttcatttgagcttgaaacttctgatatgctgaaggagttaggagtgactttac 5160531  T
Q  292 ctttctctcggggaggtttgactaaaatggtggactc 328  Q
    ||||| |||| | ||||||||| ||||||||||||||    
T  5160532 ctttcactcgtgaaggtttgacaaaaatggtggactc 5160568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 33 - 328
Target Start/End: Original strand, 46484047 - 46484342
Alignment:
Q  33 gcttttgatggtttcaaagtactttgtcttcattataaataaggccaatatgatcgccgattctctatctactttattcttccagatgcaaaagatggac 132  Q
    |||||||||||||| ||||| ||| |||||| ||||||  ||||| || || | || || ||| |||| |||||| |||||||| ||||||||||||| |    
T  46484047 gcttttgatggttttaaagttcttggtcttccttataagcaaggcgaagataagcgtcgtttcactatgtacttttttcttccaaatgcaaaagatgggc 46484146  T
Q  133 tctcggctttggttgaaaaggtggcttcagaatctgagttactacaccgtaagtttaatctttctaaagtcaaagttggtgacttcagaattccaaagtt 232  Q
    |  |   ||||||||||||||||||||| |||| ||| |||||||| |  ||| ||  | ||  ||||||  |||| |||||||| || |||||||||||    
T  46484147 ttccaagtttggttgaaaaggtggcttctgaatttgatttactacaacacaagcttccttttgataaagtggaagtaggtgactttaggattccaaagtt 46484246  T
Q  233 caatatctcatttgggtttgaaacttctgatatgctgaaggacctaggagtggttttacctttctctcggggaggtttgactaaaatggtggactc 328  Q
    |||||| ||||||||  |||||||||||| |||||| ||||| ||||| |||||||||||||||||| | |||||| |||| || |||||| ||||    
T  46484247 caatatttcatttggacttgaaacttctgttatgctaaaggagctaggtgtggttttacctttctctggtggaggtctgacaaagatggtgaactc 46484342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 92 - 412
Target Start/End: Complemental strand, 47414260 - 47413943
Alignment:
Q  92 attctctatctactttattcttccagatgcaaaagatggactctcggctttggttgaaaaggtggcttcagaatctgagttactacaccgtaagtttaat 191  Q
    ||||||||| ||| || |||||||| |  ||| ||||||||| || ||||||||||| ||||||||||| |||||||||||||||||||  ||| || ||    
T  47414260 attctctatgtacatttttcttccaaacacaagagatggactgtcagctttggttgagaaggtggcttctgaatctgagttactacaccacaagcttcat 47414161  T
Q  192 ctttctaaagtcaaagttggtgacttcagaattccaaagttcaatatctcatttgggtttgaaacttctgatatgctgaaggacctaggagtggttttac 291  Q
    ||||||||||||||||| |||||||||||||||||||  |||||  | |||||||     |||| ||||||||| ||||||||  ||||||||| ||||     
T  47414160 ctttctaaagtcaaagtaggtgacttcagaattccaagattcaaggtttcatttgaacaagaaatttctgatatcctgaaggagttaggagtgggtttag 47414061  T
Q  292 ctttctctcggggaggtttgactaaaatggtggactcacttgc------gggtcaagacctgtttgtttctaacatattccaaaagtctttcatccaagt 385  Q
     ||||||         ||||||||||||||||||||| ||| |       | ||||||||  ||||||||  | ||||| || |||||||||||| ||||    
T  47414060 atttctc---------tttgactaaaatggtggactctcttccagatcaagatcaagaccattttgtttcccagatatttcacaagtctttcatcgaagt 47413970  T
Q  386 aaacgaagaaggcactgaagctgctgc 412  Q
     || |||||||| ||||||||||||||    
T  47413969 gaatgaagaaggaactgaagctgctgc 47413943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 102 - 412
Target Start/End: Original strand, 46498016 - 46498326
Alignment:
Q  102 tactttattcttccagatgcaaaagatggactctcggctttggttgaaaaggtggcttcagaatctgagttactacaccgtaagtttaatctttctaaag 201  Q
    |||||| |||||||| ||||||||||||| ||  |  ||||| |||| ||| | ||||| |||||||||||||| || |  ||| ||  ||||   ||||    
T  46498016 tacttttttcttccaaatgcaaaagatgggctgccaactttgcttgagaagcttgcttccgaatctgagttactgcaacacaagcttcctcttgacaaag 46498115  T
Q  202 tcaaagttggtgacttcagaattccaaagttcaatatctcatttgggtttgaaacttctgatatgctgaaggacctaggagtggttttacctttctctcg 301  Q
    |  |||| |||||||| || ||||||| ||||||||| |||||||   ||||||||||||||||| | ||||| || || |||||||| |||||| ||      
T  46498116 tggaagtaggtgactttaggattccaaggttcaatatttcatttgaacttgaaacttctgatatgttaaaggagcttggcgtggttttgcctttcactaa 46498215  T
Q  302 gggaggtttgactaaaatggtggactcacttgcgggtcaagacctgtttgtttctaacatattccaaaagtctttcatccaagtaaacgaagaaggcact 401  Q
     ||||||||||||||||||||| ||||   || | ||||| |||| | |||||| || |||||||| |||||||||||  ||||||| |||||||||||     
T  46498216 tggaggtttgactaaaatggtgaactctgctgtgagtcaaaacctttatgtttccaaaatattccacaagtctttcattgaagtaaatgaagaaggcacc 46498315  T
Q  402 gaagctgctgc 412  Q
     ||||||||||    
T  46498316 aaagctgctgc 46498326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 216 - 412
Target Start/End: Original strand, 5156427 - 5156626
Alignment:
Q  216 ttcagaattccaaagttcaatatctcatttgggtttgaaacttctgatatgctgaaggacctaggagtggttttacctttctctcggggaggtttgacta 315  Q
    |||||||||||||  ||||| || ||||||| | |||||||||| |||||| | || || ||||||||| ||||||||||| |||| ||||||||||| |    
T  5156427 ttcagaattccaagattcaaaatttcatttgagcttgaaacttccgatatgttcaaagagctaggagtgattttacctttcactcgtggaggtttgacaa 5156526  T
Q  316 aaatggtggact---cacttgcgggtcaaga-cctgtttgtttctaacatattccaaaagtctttcatccaagtaaacgaagaaggcactgaagctgctg 411  Q
    ||||||||||||   | |||| ||| ||| | ||| | ||||||||| ||||| || || ||||||||  ||||||| ||||||||||||||||||||||    
T  5156527 aaatggtggactctcctcttgtggg-caatagcctttctgtttctaaaatatttcacaaatctttcattgaagtaaatgaagaaggcactgaagctgctg 5156625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 210 - 328
Target Start/End: Original strand, 46539173 - 46539291
Alignment:
Q  210 ggtgacttcagaattccaaagttcaatatctcatttgggtttgaaacttctgatatgctgaaggacctaggagtggttttacctttctctcggggaggtt 309  Q
    |||||||||||||||||||  ||||| || || |||| | ||||||||||| ||||||| ||||| |||||| ||||||||||||||||||  |||||||    
T  46539173 ggtgacttcagaattccaagattcaaaatttcttttgagcttgaaacttctaatatgcttaaggagctaggaatggttttacctttctctcaaggaggtt 46539272  T
Q  310 tgactaaaatggtggactc 328  Q
    |||| ||||||||||||||    
T  46539273 tgacaaaaatggtggactc 46539291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 210 - 412
Target Start/End: Original strand, 46544648 - 46544850
Alignment:
Q  210 ggtgacttcagaattccaaagttcaatatctcatttgggtttgaaacttctgatatgctgaaggacctaggagtggttttacctttctctcggggaggtt 309  Q
    |||||||| |||||||| || ||||||||  | |||||| ||||||||||||   |||||||||| ||||||||||||||||||||||||   |||||||    
T  46544648 ggtgacttaagaattccgaaattcaatattgcttttgggcttgaaacttctggcgtgctgaaggagctaggagtggttttacctttctctacaggaggtt 46544747  T
Q  310 tgactaaaatggtggactcacttgcgggtcaagacctgtttgtttctaacatattccaaaagtctttcatccaagtaaacgaagaaggcactgaagctgc 409  Q
    |||| || ||||||||||| | |  || |||| ||||   | |||| ||||||||||| |||||||| ||  ||||||| ||| | || |||||||||||    
T  46544748 tgacaaatatggtggactctcctatggatcaaaaccttcatatttccaacatattccacaagtcttttattgaagtaaatgaaaagggaactgaagctgc 46544847  T
Q  410 tgc 412  Q
    |||    
T  46544848 tgc 46544850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 250 - 410
Target Start/End: Complemental strand, 47397217 - 47397057
Alignment:
Q  250 ttgaaacttctgatatgctgaaggacctaggagtggttttacctttctctcggggaggtttgactaaaatggtggactcacttgcgggtcaagacctgtt 349  Q
    ||||||||||||||||| |||||||  |||||||| ||||||||||||| |  |||||||| || |||||| ||||||  || ||||||||| |||| ||    
T  47397217 ttgaaacttctgatatgttgaaggagttaggagtgattttacctttctccctcggaggtttaacaaaaatgatggactttctagcgggtcaaaacctttt 47397118  T
Q  350 tgtttctaacatattccaaaagtctttcatccaagtaaacgaagaaggcactgaagctgct 410  Q
    |||||| |||||||| || |||| ||||||  ||||||| ||  |||||||| ||| ||||    
T  47397117 tgtttccaacatatttcagaagtatttcattgaagtaaatgagaaaggcactaaagttgct 47397057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 210 - 296
Target Start/End: Original strand, 46490885 - 46490971
Alignment:
Q  210 ggtgacttcagaattccaaagttcaatatctcatttgggtttgaaacttctgatatgctgaaggacctaggagtggttttacctttc 296  Q
    |||||||| || || |||| ||||||||| ||||||||  ||||||||||||||||||||||||| || || |||||||||||||||    
T  46490885 ggtgactttaggatcccaaggttcaatatttcatttggacttgaaacttctgatatgctgaaggagctgggcgtggttttacctttc 46490971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 35 - 136
Target Start/End: Complemental strand, 46549111 - 46549010
Alignment:
Q  35 ttttgatggtttcaaagtactttgtcttcattataaataaggccaatatgatcgccgattctctatctactttattcttccagatgcaaaagatggactc 134  Q
    |||||||||||||||||| |||| ||||| ||||||||||||  || || | || | ||||||||| |||||| |||||||| || ||||||||||||||    
T  46549111 ttttgatggtttcaaagttctttatcttccttataaataaggaaaagataaacgacaattctctatgtacttttttcttccaaatacaaaagatggactc 46549012  T
Q  135 tc 136  Q
    ||    
T  46549011 tc 46549010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 87 - 328
Target Start/End: Original strand, 51943943 - 51944184
Alignment:
Q  87 cgccgattctctatctactttattcttccagatgcaaaagatggactctcggctttggttgaaaaggtggcttcagaatctgagttactacaccgtaagt 186  Q
    |||| ||||||||| || ||| |||||||| |||||||||||||  | || ||||| |||||||| ||| | ||   ||||||||| |||||||| |       
T  51943943 cgccaattctctatgtatttttttcttccaaatgcaaaagatgggttgtcagctttagttgaaaaagtgtcctctacatctgagttcctacaccggagcc 51944042  T
Q  187 ttaatctttctaaagtcaaagttggtgacttcagaattccaaagttcaatatctcatttgggtttgaaacttctgatatgctgaaggacctaggagtggt 286  Q
    ||  ||||||| ||    || | ||| |||| | |||||| || |||||||| ||||||| | ||||| || ||  |||||| ||| | |||||||||||    
T  51944043 tttgtctttctcaaaaggaactaggtaactttaaaattccgaaattcaatatttcatttgagcttgaagctactcgtatgctaaagaagctaggagtggt 51944142  T
Q  287 tttacctttctctcggggaggtttgactaaaatggtggactc 328  Q
    |||||||||||| |  |||||||| || ||||||||||||||    
T  51944143 tttacctttctcacctggaggttttacaaaaatggtggactc 51944184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 222 - 412
Target Start/End: Complemental strand, 46236731 - 46236538
Alignment:
Q  222 attccaaagttcaatatctcatttgggtttgaaacttctgatatgctgaaggacctaggagtggttttacctttctctcggggaggtttgactaaaatgg 321  Q
    |||||||  |||||||| || |||||  |||||||| || ||| | |||||||  |||||||| ||||||||||||||   |||||||| || ||||| |    
T  46236731 attccaagattcaatatttcgtttggaattgaaactactaatacgatgaaggagttaggagtgattttacctttctctgctggaggttttacaaaaattg 46236632  T
Q  322 tggactcac---ttgcgggtcaagacctgtttgtttctaacatattccaaaagtctttcatccaagtaaacgaagaaggcactgaagctgctgc 412  Q
    |||| ||     ||| |||| || |||| | |||||| |||||||| || || ||||||||  ||||||| |||||||||||||||| ||||||    
T  46236631 tggattcttcttttgagggtgaaaacctatatgtttccaacatatttcacaaatctttcattgaagtaaatgaagaaggcactgaagttgctgc 46236538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 214 - 412
Target Start/End: Complemental strand, 46548948 - 46548750
Alignment:
Q  214 acttcagaattccaaagttcaatatctcatttgggtttgaaacttctgatatgctgaaggacctaggagtggttttacctttctctcggggaggtttgac 313  Q
    ||||||| |||||||  ||||| || | ||||| | ||||||||||  || |||| ||||| |||||||| | | ||||||||| ||  || ||||||||    
T  46548948 acttcaggattccaagattcaaaatattatttgagcttgaaacttcaaatgtgctcaaggaactaggagttgatctacctttctatcctggtggtttgac 46548849  T
Q  314 taaaatggtggactcacttgcgggtcaagacctgtttgtttctaacatattccaaaagtctttcatccaagtaaacgaagaaggcactgaagctgctgc 412  Q
     ||||||||| |||| | |   | | || |||| | ||||||||| ||||| || |||||||||||  ||||||| |||||||| | ||||||||||||    
T  46548848 aaaaatggtgaactctcctattgataaatacctttatgtttctaaaatatttcacaagtctttcattgaagtaaaagaagaaggtaatgaagctgctgc 46548750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 351 - 412
Target Start/End: Original strand, 46532224 - 46532285
Alignment:
Q  351 gtttctaacatattccaaaagtctttcatccaagtaaacgaagaaggcactgaagctgctgc 412  Q
    |||||||||||||| ||||| ||||||||  ||||||| ||| |||||||||||||||||||    
T  46532224 gtttctaacatatttcaaaattctttcattgaagtaaatgaaaaaggcactgaagctgctgc 46532285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 198 - 295
Target Start/End: Complemental strand, 4581343 - 4581246
Alignment:
Q  198 aaagtcaaagttggtgacttcagaattccaaagttcaatatctcatttgggtttgaaacttctgatatgctgaaggacctaggagtggttttaccttt 295  Q
    ||||| |||||||||| |||| | |||||||  |||||||| || ||||   ||||||| |||  | |||||||||| ||||||||||||||||||||    
T  4581343 aaagttaaagttggtgccttccggattccaagattcaatatttcttttgaacttgaaacgtctagtgtgctgaaggagctaggagtggttttaccttt 4581246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 198 - 295
Target Start/End: Complemental strand, 4613800 - 4613703
Alignment:
Q  198 aaagtcaaagttggtgacttcagaattccaaagttcaatatctcatttgggtttgaaacttctgatatgctgaaggacctaggagtggttttaccttt 295  Q
    ||||| |||||||||  |||| | |||||||   ||||||| || |||| | ||||||| |||  |||||||||||| ||||||||||||||||||||    
T  4613800 aaagttaaagttggtaccttccggattccaagactcaatatttcttttgagcttgaaacgtctagtatgctgaaggagctaggagtggttttaccttt 4613703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 452 - 484
Target Start/End: Complemental strand, 46506954 - 46506922
Alignment:
Q  452 tcctcgactagactttgtagctgaccacccatt 484  Q
    |||||||||||||||||||||||||||||||||    
T  46506954 tcctcgactagactttgtagctgaccacccatt 46506922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 174
Target Start/End: Complemental strand, 46236921 - 46236782
Alignment:
Q  35 ttttgatggtttcaaagtactttgtcttcattataaataaggccaatatgatcgccgattctctatctactttattcttccagatgcaaaagatggactc 134  Q
    |||||||||||  ||||| |||| ||||| ||||||  ||||| || ||||  | | ||||||||| ||  || ||||||||||||||||||||||  |     
T  46236921 ttttgatggttataaagttctttatcttccttataatcaaggcaaagatgagtgtcaattctctatgtatatttttcttccagatgcaaaagatgggttg 46236822  T
Q  135 tcggctttggttgaaaaggtggcttcagaatctgagttac 174  Q
    ||  | |||||||| ||| ||||||| |||| ||||||||    
T  46236821 tcaaccttggttgagaagctggcttctgaatttgagttac 46236782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 328
Target Start/End: Complemental strand, 46526379 - 46526256
Alignment:
Q  205 aagttggtgacttcagaattccaaagttcaatatctcatttgggtttgaaacttctgatatgctgaaggacctaggagtggttttacctttctctcgggg 304  Q
    |||| ||||| |||||||||||||| |||||  | ||||||| | |||| |||||| | ||| |||| ||  ||| |||| |||||||||||||| | ||    
T  46526379 aagtaggtgatttcagaattccaaaattcaaattttcatttgagcttgacacttctcaaatgttgaaagagttagaagtgattttacctttctcttgtgg 46526280  T
Q  305 aggtttgactaaaatggtggactc 328  Q
     |||||||| || || ||||||||    
T  46526279 gggtttgacaaatattgtggactc 46526256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 328
Target Start/End: Original strand, 46532162 - 46532213
Alignment:
Q  277 taggagtggttttacctttctctcggggaggtttgactaaaatggtggactc 328  Q
    ||||||| ||||||||||||||| | ||||||||||| ||||||| ||||||    
T  46532162 taggagttgttttacctttctctggtggaggtttgacaaaaatggcggactc 46532213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 93 - 172
Target Start/End: Original strand, 46544531 - 46544610
Alignment:
Q  93 ttctctatctactttattcttccagatgcaaaagatggactctcggctttggttgaaaaggtggcttcagaatctgagtt 172  Q
    |||||||| |||||| ||||||| ||||||||||||||  | |  ||||||  ||||||||| ||||| |||||||||||    
T  46544531 ttctctatttacttttttcttcctgatgcaaaagatgggttgttagctttgactgaaaaggtagcttctgaatctgagtt 46544610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 328
Target Start/End: Complemental strand, 46554133 - 46554015
Alignment:
Q  210 ggtgacttcagaattccaaagttcaatatctcatttgggtttgaaacttctgatatgctgaaggacctaggagtggttttacctttctctcggggaggtt 309  Q
    |||||||| || |||||||  ||| | || || ||||||||||||  |||| |||||||||||||  | |||||| ||||||||||||||   |||||||    
T  46554133 ggtgactttaggattccaagtttcgaaatttcttttgggtttgaactttctaatatgctgaaggagttgggagtgattttacctttctctaatggaggtt 46554034  T
Q  310 tgactaaaatggtggactc 328  Q
    | || ||||| || |||||    
T  46554033 taacaaaaatagtagactc 46554015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 360 - 412
Target Start/End: Original strand, 46484366 - 46484418
Alignment:
Q  360 atattccaaaagtctttcatccaagtaaacgaagaaggcactgaagctgctgc 412  Q
    ||||| || || ||||||||  ||||||| |||||||||||||||||||||||    
T  46484366 atattgcacaaatctttcattgaagtaaatgaagaaggcactgaagctgctgc 46484418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 4e-36; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 92 - 410
Target Start/End: Complemental strand, 9675763 - 9675445
Alignment:
Q  92 attctctatctactttattcttccagatgcaaaagatggactctcggctttggttgaaaaggtggcttcagaatctgagttactacaccgtaagtttaat 191  Q
    ||||||||| ||| || |||||||| ||||||||| |||||| |||||| ||||||||||||||||||| |||| |||||| ||| | |  ||| ||       
T  9675763 attctctatgtacatttttcttccaaatgcaaaaggtggactatcggctatggttgaaaaggtggcttctgaatttgagttcctagagcccaagctt--- 9675667  T
Q  192 ctttctaaa---gtcaaagttggtgacttcagaattccaaagttcaatatctcatttgggtttgaaacttctgatatgctgaaggacctaggagtggttt 288  Q
    | || ||||   || ||||| ||| | |||  ||||||||  |||||  | ||||||||| |||||||||||   ||| ||||||| ||||||||| |||    
T  9675666 ccttataaacgagtgaaagtaggtaatttccaaattccaagattcaaattttcatttgggcttgaaacttctcgaatgatgaaggagctaggagtgattt 9675567  T
Q  289 tacctttctctcggggaggtttgactaaaatggtggactcacttgcgggtcaagacctgtttgtttctaacatattccaaaagtctttcatccaagtaaa 388  Q
    |||||||||||   ||||||||||| |||||||||||||| ||||  ||||||||| | | |||||| |||||||| || ||||||  |||  |||||||    
T  9675566 tacctttctcttctggaggtttgacaaaaatggtggactctcttgaaggtcaagacttttctgtttccaacatatttcacaagtctaccattgaagtaaa 9675467  T
Q  389 cgaagaaggcactgaagctgct 410  Q
     || ||||||||||||||||||    
T  9675466 tgaggaaggcactgaagctgct 9675445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 33 - 410
Target Start/End: Complemental strand, 9692844 - 9692467
Alignment:
Q  33 gcttttgatggtttcaaagtactttgtcttcattataaataaggccaatatgatcgccgattctctatctactttattcttccagatgcaaaagatggac 132  Q
    |||||||||||||| ||||| ||| |||||| |||||| |||||  || || | || | ||||||||| ||| || |||||||| |||||||||||| ||    
T  9692844 gcttttgatggttttaaagttcttcgtcttccttataattaaggaaaaaataagcgacaattctctatgtacatttttcttccaaatgcaaaagatgtac 9692745  T
Q  133 tctcggctttggttgaaaaggtggcttcagaatctgagttactacaccgtaagtttaatctttctaaa---gtcaaagttggtgacttcagaattccaaa 229  Q
    | |  ||| ||||||| || |||||||| |||| |||||| ||| | |  ||| ||   | || ||||   || | | | ||||| |||  ||||||||     
T  9692744 tattagctatggttgagaaagtggcttctgaatttgagttcctagagcacaagctt---ccttataaactagtgagaataggtgaattccaaattccaag 9692648  T
Q  230 gttcaatatctcatttgggtttgaaacttctgatatgctgaaggacctaggagtggttttacctttctctcggggaggtttgactaaaatggtggactca 329  Q
     |||||  | ||||||||| |||||||||||  ||||  ||||||  ||||||||  |||||||||||||   ||||||||||| ||||||||||||||     
T  9692647 attcaaattttcatttgggcttgaaacttctcgtatgacgaaggagttaggagtgagtttacctttctcttctggaggtttgacaaaaatggtggactct 9692548  T
Q  330 cttgcgggtcaagacctgtttgtttctaacatattccaaaagtctttcatccaagtaaacgaagaaggcactgaagctgct 410  Q
    ||||  ||||||||||| | |||||| |||||||| || |||||||||||  |||||||||| ||||||||||||||||||    
T  9692547 cttgaaggtcaagacctttctgtttccaacatatttcacaagtctttcattgaagtaaacgaggaaggcactgaagctgct 9692467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 205 - 406
Target Start/End: Complemental strand, 21464144 - 21463943
Alignment:
Q  205 aagttggtgacttcagaattccaaagttcaatatctcatttgggtttgaaacttctgatatgctgaaggacctaggagtggttttacctttctctcgggg 304  Q
    |||||||||||||||| ||||| || ||||| || || |||||| |||||  ||||||||||||||| || ||||| ||||||||||||||||||   ||    
T  21464144 aagttggtgacttcaggattccgaaattcaagatttcttttgggcttgaatgttctgatatgctgaaagagctaggcgtggttttacctttctctgaagg 21464045  T
Q  305 aggtttgactaaaatggtggactcacttgcgggtcaagacctgtttgtttctaacatattccaaaagtctttcatccaagtaaacgaagaaggcactgaa 404  Q
    || |||||| |||||||||||||| |     | |||| |||| | ||| || |||||||| || |||||||| ||  |||||||||||||||| || |||    
T  21464044 agctttgacaaaaatggtggactctcgaattgctcaaaacctttatgtgtccaacatatttcacaagtcttttattgaagtaaacgaagaaggtaccgaa 21463945  T
Q  405 gc 406  Q
    ||    
T  21463944 gc 21463943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 1e-33; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 199 - 412
Target Start/End: Original strand, 20144794 - 20145007
Alignment:
Q  199 aagtcaaagttggtgacttcagaattccaaagttcaatatctcatttgggtttgaaacttctgatatgctgaaggacctaggagtggttttacctttctc 298  Q
    |||| ||||| ||||| || | ||||||||  |||||| | ||||||||| ||||||||  |||||  || |||||  |||||||||||||||| ||||     
T  20144794 aagtgaaagtaggtgaatttaaaattccaagattcaatgtttcatttgggcttgaaactagtgataccctaaaggagttaggagtggttttaccattctt 20144893  T
Q  299 tcggggaggtttgactaaaatggtggactcacttgcgggtcaagacctgtttgtttctaacatattccaaaagtctttcatccaagtaaacgaagaaggc 398  Q
    ||  ||||||||||| |||||||||||||| ||||||||||||  ||| | ||||||| ||||||| || ||||||||||||  |||||||||||||||     
T  20144894 tcctggaggtttgacaaaaatggtggactctcttgcgggtcaaagcctttctgtttctcacatatttcacaagtctttcatcagagtaaacgaagaaggt 20144993  T
Q  399 actgaagctgctgc 412  Q
    || |||| ||||||    
T  20144994 accgaagttgctgc 20145007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 199 - 412
Target Start/End: Complemental strand, 20168980 - 20168767
Alignment:
Q  199 aagtcaaagttggtgacttcagaattccaaagttcaatatctcatttgggtttgaaacttctgatatgctgaaggacctaggagtggttttacctttctc 298  Q
    |||| ||||| |||||||| | |||||| |  |||||| | ||||||||| ||||||||  |||||  || ||||   |||||||| ||||||| ||||     
T  20168980 aagtgaaagtaggtgactttaaaattcctagattcaatgtttcatttgggcttgaaactagtgataccctaaaggggttaggagtgattttaccattctt 20168881  T
Q  299 tcggggaggtttgactaaaatggtggactcacttgcgggtcaagacctgtttgtttctaacatattccaaaagtctttcatccaagtaaacgaagaaggc 398  Q
    ||  ||||||||||| ||||||||||| ||  | |||||||||  ||| ||||||||| ||||||| || ||||||||||||  |||||||||||||||     
T  20168880 tcctggaggtttgacaaaaatggtggattctatcgcgggtcaaagcctttttgtttctcacatatttcacaagtctttcatcagagtaaacgaagaaggt 20168781  T
Q  399 actgaagctgctgc 412  Q
    || |||| ||||||    
T  20168780 accgaagttgctgc 20168767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 199 - 410
Target Start/End: Original strand, 20359304 - 20359515
Alignment:
Q  199 aagtcaaagttggtgacttcagaattccaaagttcaatatctcatttgggtttgaaacttctgatatgctgaaggacctaggagtggttttacctttctc 298  Q
    |||| ||||| ||||| || | ||||||||  |||||| | ||||||||| ||||||||  |||||  || |||||  ||||||||  |||||| ||||     
T  20359304 aagtgaaagtaggtgaatttaaaattccaagattcaatgtttcatttgggcttgaaactagtgataccctaaaggagttaggagtgactttaccattctt 20359403  T
Q  299 tcggggaggtttgactaaaatggtggactcacttgcgggtcaagacctgtttgtttctaacatattccaaaagtctttcatccaagtaaacgaagaaggc 398  Q
    ||  ||||||||||  ||||||||||| ||  | |||||||||  ||| |||||||||  |||||| || ||||||||||||  || ||||||||||||     
T  20359404 tcctggaggtttgaaaaaaatggtggattctatcgcgggtcaaagcctttttgtttctcgcatatttcacaagtctttcatcagaggaaacgaagaaggt 20359503  T
Q  399 actgaagctgct 410  Q
    || |||| ||||    
T  20359504 accgaagttgct 20359515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 397
Target Start/End: Original strand, 16722332 - 16722513
Alignment:
Q  216 ttcagaattccaaagttcaatatctcatttgggtttgaaacttctgatatgctgaaggacctaggagtggttttacctttctctcggggaggtttgacta 315  Q
    ||||| |||||||  |||||||| || |||| | ||||| |||||||  | || ||| |  ||||| ||| |||||||||  ||| |||||||||||| |    
T  16722332 ttcaggattccaagattcaatatttcttttgagattgaagcttctgagttactaaagaaattaggattggctttaccttttactctgggaggtttgacaa 16722431  T
Q  316 aaatggtggactcacttgcgggtcaagacctgtttgtttctaacatattccaaaagtctttcatccaagtaaacgaagaagg 397  Q
    ||||||||||||| | |    ||||||| || | ||||||   |||||| || |||||||||||  ||||||| ||||||||    
T  16722432 aaatggtggactctcctataagtcaagaactttatgtttccggcatatttcagaagtctttcattgaagtaaatgaagaagg 16722513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 397
Target Start/End: Original strand, 17699346 - 17699527
Alignment:
Q  216 ttcagaattccaaagttcaatatctcatttgggtttgaaacttctgatatgctgaaggacctaggagtggttttacctttctctcggggaggtttgacta 315  Q
    ||||| |||||||  |||||||| || |||| | ||||| |||||||  | || ||| |  ||||| ||| |||||||||  ||| |||||||||||| |    
T  17699346 ttcaggattccaagattcaatatttcttttgagattgaagcttctgagttactaaagaaattaggattggctttaccttttactctgggaggtttgacaa 17699445  T
Q  316 aaatggtggactcacttgcgggtcaagacctgtttgtttctaacatattccaaaagtctttcatccaagtaaacgaagaagg 397  Q
    ||||||||||||| | |    ||||||| || | ||||||   |||||| || |||||||||||  ||||||| ||||||||    
T  17699446 aaatggtggactctcctataagtcaagaactttatgtttccggcatatttcagaagtctttcattgaagtaaatgaagaagg 17699527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 34 - 130
Target Start/End: Original strand, 17708273 - 17708369
Alignment:
Q  34 cttttgatggtttcaaagtactttgtcttcattataaataaggccaatatgatcgccgattctctatctactttattcttccagatgcaaaagatgg 130  Q
    ||||||||||||| ||||| ||| |||||| ||| ||| ||||| | ||||  ||   |||||| || |||||| ||||||| ||||||||||||||    
T  17708273 cttttgatggttttaaagttcttggtcttccttacaaacaaggcaattatgggcgtgcattctccatttacttttttcttcccgatgcaaaagatgg 17708369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 34 - 130
Target Start/End: Original strand, 17718097 - 17718193
Alignment:
Q  34 cttttgatggtttcaaagtactttgtcttcattataaataaggccaatatgatcgccgattctctatctactttattcttccagatgcaaaagatgg 130  Q
    ||||||||||||| ||||| ||| |||||| ||| ||| ||||| | ||||  ||   |||||| || |||||| ||||||| ||||||||||||||    
T  17718097 cttttgatggttttaaagttcttggtcttccttacaaacaaggcaattatgggcgtgcattctccatttacttttttcttcccgatgcaaaagatgg 17718193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University