View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3363_high_9 (Length: 418)
Name: NF3363_high_9
Description: NF3363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3363_high_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 18 - 413
Target Start/End: Original strand, 28896834 - 28897228
Alignment:
| Q |
18 |
cctttagcaggtaaaccaagagcagcaccaatatcagaaacagcaggttgaagttcagtcagagagagtttaccatctttatctctatccaactcttgaa |
117 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28896834 |
cctttagcaggtaaaccaagagcagaaccaatatcagaaacagcaggttgaagttcagtcagagagagtttaccatctttatctctatccaactcttgaa |
28896933 |
T |
|
| Q |
118 |
acttatggttcacaaagttactaaaaacatctttgtttccaactaactccataatattagaaccatctagaacctctactgcgtttccaccaccaccacc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28896934 |
acttatggttcacaaagttactaaaaacatctttgtttccaactaactccataatattagaaccatctagaacctctactgcgtttccaccaccaccacc |
28897033 |
T |
|
| Q |
218 |
actttttctcttaactgaaccactctccattgtgaatcctgtgactcacctttctctttttctttgctactctcgtgacactcacacgagttaaaagtgt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
28897034 |
actttttctcttaactgaaccactctccattgtgaatcctgtgactcacctttctctttttctttgctactctcgtgacactcacacgagtt-aaagtgt |
28897132 |
T |
|
| Q |
318 |
tgagaacttactacttgatattctatactatttctctctcaaaatattcagtttagtttcaactttttcaattcaattcaactactactttgcttc |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
28897133 |
tgagaacttactacttgatattctatactatttctgtctcaaaatattcagtttagtttcaactttttcaattcaatttaactactactttgcttc |
28897228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University