View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3363_low_1 (Length: 667)
Name: NF3363_low_1
Description: NF3363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3363_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 553; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 553; E-Value: 0
Query Start/End: Original strand, 13 - 648
Target Start/End: Complemental strand, 28921974 - 28921339
Alignment:
| Q |
13 |
atgaatattgatataggttgtagtttgccacagtcaagagttttacacggaggcgcggggactagttacggacaaaaatatgtaggtcaagtaggttgtt |
112 |
Q |
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| T |
28921974 |
atgaatattgatataggttgtagtttgccacagtcaagagttttacacggaggcgcggggactagttacggacaaaaatatgtaggtcaagcaggttgtt |
28921875 |
T |
|
| Q |
113 |
tcgactttagaaggagaggttttggttgtggtttactgggtaagagtgttttgaggtcgcgttttagtgtggagaacaaagttagttgtatttctgcttt |
212 |
Q |
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| T |
28921874 |
tcgactttagaaggagaggttttggttgtggtttactgggtaaaagtgttttgaggtcgcgttttagtgtggagaacaaagttagttgtatttctgcttt |
28921775 |
T |
|
| Q |
213 |
gaatgattctggtgatgagtttaaagttttgaacaagaagagaagcgtgtcatgtaagaatgagaaacttcttatgggatctagaaagatttggttgaag |
312 |
Q |
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| T |
28921774 |
gaatgattctggtgatgagtttaaagttttgaacaagaagagaagcgtgtcatctaagaatgagaaacttcttatgggatctagaaagatttggttgaag |
28921675 |
T |
|
| Q |
313 |
tgtcagggtagtgattctttagcttatgttaatggaaatggtcgcaatgttgattatgtggaaggttcgggtgaggatttaggggtagtacctgtagctg |
412 |
Q |
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| T |
28921674 |
tgtcagggtagtgattctttagcttatgttaatggaaatggtcgcaatgttgattatgtggaaggttcgggtgaggatttaggggtggtacctgtagctg |
28921575 |
T |
|
| Q |
413 |
gtgttgaattggatgtttcaggggaagaaggagggaaggttgagagggaaataggagtagaggnnnnnnntgttgatgagttgaaagaactattgcaaaa |
512 |
Q |
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| T |
28921574 |
gtgttgaattggatgtttcaggggaagaaggagggaaggttgagagggaaataggagtagaggaaaaaaatgttgatgagttgaaagaactattgcaaaa |
28921475 |
T |
|
| Q |
513 |
ggccgtgaaagagcttgaggtagcgcaaataaatagtactatgtttgaagaaaaggttnnnnnnntatcagagactgccannnnnnngcatgatgaagca |
612 |
Q |
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| T |
28921474 |
ggccgtgaaagagcttgaggtagcgcaaataaatagtactatgtttgaagaaaaggttaaaaaaatatcagagactgccatttttttgcatgatgaagca |
28921375 |
T |
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| Q |
613 |
acccgatctttggatgatgttaattctacccttgac |
648 |
Q |
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| T |
28921374 |
gcccgatctttggatgatgttaattctacccttgac |
28921339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 379
Target Start/End: Original strand, 11841661 - 11841730
Alignment:
| Q |
310 |
aagtgtcagggtagtgattctttagcttatgttaatggaaatggtcgcaatgttgattatgtggaaggtt |
379 |
Q |
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||||||||||| | ||||||||| || |||| ||||||||||||| | ||||||||| || || |||||| |
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| T |
11841661 |
aagtgtcagggaaatgattcttttgcatatgataatggaaatggtaggaatgttgataatttgaaaggtt |
11841730 |
T |
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