View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3363_low_10 (Length: 409)

Name: NF3363_low_10
Description: NF3363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3363_low_10
NF3363_low_10
[»] chr2 (2 HSPs)
chr2 (15-257)||(16149629-16149871)
chr2 (352-409)||(16149478-16149535)
[»] chr1 (3 HSPs)
chr1 (95-257)||(23302268-23302430)
chr1 (351-409)||(23302525-23302583)
chr1 (54-146)||(44680212-44680304)
[»] chr6 (3 HSPs)
chr6 (15-257)||(4652238-4652471)
chr6 (351-409)||(4652085-4652144)
chr6 (54-146)||(2482134-2482226)
[»] chr8 (2 HSPs)
chr8 (54-146)||(14198126-14198218)
chr8 (54-146)||(18615874-18615965)
[»] chr4 (2 HSPs)
chr4 (54-144)||(12631894-12631984)
chr4 (54-146)||(27107598-27107690)


Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-122; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 15 - 257
Target Start/End: Complemental strand, 16149871 - 16149629
Alignment:
Q  15 agaaaaaagactagaaaacatattttggtctccacctcattgttttgaattgtaccaacagtatggagatgctgttgcatttgatactacttacaaggta 114  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16149871 agaaaaaagactagaaaatatattttggtctccacctcattgttttgaattgtaccaacagtatggagatgctgttgcatttgatactacttacaaggta 16149772  T
Q  115 aatacttataatatgccttttggcatttttgttggagtcgacaatcacggcagaacaatattgtttggttgtgcgctcattcgaaatgaaacattgtcta 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  16149771 aatacttataatatgccttttggcatttttgttggagtcgacaatcacggcagaacaatattgtttggttgtgcgctcattcgaaatgaaacggtgtcta 16149672  T
Q  215 catttcaatggttaatgaaagttagttcatatacatgtctctc 257  Q
    |||||||||||||||||||||| ||||||||||||| ||||||    
T  16149671 catttcaatggttaatgaaagtaagttcatatacatctctctc 16149629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 352 - 409
Target Start/End: Complemental strand, 16149535 - 16149478
Alignment:
Q  352 cagacttttgttactctcatgaagaagcctccaaagccaatcattactgatcaagatc 409  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  16149535 cagacttttgttactctcatgaagaagcctccaaagacaatcattactgatcaagatc 16149478  T

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Target: chr1 (Bit Score: 139; Significance: 1e-72; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 95 - 257
Target Start/End: Original strand, 23302268 - 23302430
Alignment:
Q  95 ttgatactacttacaaggtaaatacttataatatgccttttggcatttttgttggagtcgacaatcacggcagaacaatattgtttggttgtgcgctcat 194  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  23302268 ttgatactacttacaaggtaaatacttataatatgccttttggcatctttgttgtaatcgacaatcacggcagaacaatattgtttggttgtgcgctcat 23302367  T
Q  195 tcgaaatgaaacattgtctacatttcaatggttaatgaaagttagttcatatacatgtctctc 257  Q
    ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  23302368 tcgaaatgaaacagtgtctacatttcaatggttaatgaaagtaagttcatatacatctctctc 23302430  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 351 - 409
Target Start/End: Original strand, 23302525 - 23302583
Alignment:
Q  351 ccagacttttgttactctcatgaagaagcctccaaagccaatcattactgatcaagatc 409  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  23302525 ccagacttttgttactctcatgaagaagcctccaaagacaatcattactgatcaagatc 23302583  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 146
Target Start/End: Complemental strand, 44680304 - 44680212
Alignment:
Q  54 ttgttttgaattgtaccaacagtatggagatgctgttgcatttgatactacttacaaggtaaatacttataatatgccttttggcatttttgt 146  Q
    ||||||||| | ||||||| | || || |||| ||||| |||||||||||| |||||||| ||| ||||| | ||||| ||||| ||||||||    
T  44680304 ttgttttgattggtaccaaaaatacggtgatgttgttgtatttgatactacatacaaggtcaattcttatgaaatgccatttgggatttttgt 44680212  T

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Target: chr6 (Bit Score: 137; Significance: 2e-71; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 15 - 257
Target Start/End: Complemental strand, 4652471 - 4652238
Alignment:
Q  15 agaaaaaagactagaaaacatattttggtctccacctc-----attgttttgaattgtaccaacagtatggagatgctgttgcatttgatactacttaca 109  Q
    |||||||||||||||||| |||||||||||||||| ||     |||||||||||||||||||||   ||||||||| |||||||||||| |||| |||||    
T  4652471 agaaaaaagactagaaaatatattttggtctccacatcattatattgttttgaattgtaccaacgtaatggagatgatgttgcatttgagactatttaca 4652372  T
Q  110 aggtaaatacttataatatgccttttggcatttttgttggagtcgacaatcacggcagaacaatattgtttggttgtgcgctcattcgaaatgaaacatt 209  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||              |||||||||||||||||||||||||||||||||||||||||    
T  4652371 aggtacatacttataatatgccttttggcatttttgttggaatcg--------------acaatattgtttggttgtgcgctcattcgaaatgaaacatt 4652286  T
Q  210 gtctacatttcaatggttaatgaaagttagttcatatacatgtctctc 257  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  4652285 gtctacatttcaatggttaatgaaagttagttcatatacatctctctc 4652238  T

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Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 351 - 409
Target Start/End: Complemental strand, 4652144 - 4652085
Alignment:
Q  351 ccagacttttgttactctcatgaagaagcctcc-aaagccaatcattactgatcaagatc 409  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  4652144 ccagacttttgttactctcatgaagaagcctccaaaagccaatcattactgatcaagatc 4652085  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 146
Target Start/End: Original strand, 2482134 - 2482226
Alignment:
Q  54 ttgttttgaattgtaccaacagtatggagatgctgttgcatttgatactacttacaaggtaaatacttataatatgccttttggcatttttgt 146  Q
    ||||||||| | ||||||| | || || |||| |||||  ||||||||||| |||||||| ||| ||||| | ||||| ||||| ||||||||    
T  2482134 ttgttttgattggtaccaaaaatacggtgatgttgttgtgtttgatactacatacaaggttaattcttatgaaatgccatttgggatttttgt 2482226  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 146
Target Start/End: Original strand, 14198126 - 14198218
Alignment:
Q  54 ttgttttgaattgtaccaacagtatggagatgctgttgcatttgatactacttacaaggtaaatacttataatatgccttttggcatttttgt 146  Q
    ||||||||| | ||||||| | || || |||| ||||| |||||||||||| |||||||| ||| ||||| | ||||| ||||| ||||||||    
T  14198126 ttgttttgattggtaccaaaaatacggtgatgttgttgtatttgatactacatacaaggtcaattcttatgaaatgccatttgggatttttgt 14198218  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 146
Target Start/End: Complemental strand, 18615965 - 18615874
Alignment:
Q  54 ttgttttgaattgtaccaacagtatggagatgctgttgcatttgatactacttacaaggtaaatacttataatatgccttttggcatttttgt 146  Q
    ||||||||| ||||||||| | ||||| |||| ||||| |||||||||||| |||||||| ||| ||||| | ||| | ||||| ||||||||    
T  18615965 ttgttttga-ttgtaccaaaaatatggcgatgttgttgtatttgatactacatacaaggtcaattcttatgaaatgtcatttggaatttttgt 18615874  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 54 - 144
Target Start/End: Complemental strand, 12631984 - 12631894
Alignment:
Q  54 ttgttttgaattgtaccaacagtatggagatgctgttgcatttgatactacttacaaggtaaatacttataatatgccttttggcattttt 144  Q
    ||||||||| | ||||||| | || || |||| ||||| |||||||||||| |||||||| ||| ||||| | ||||| ||||| ||||||    
T  12631984 ttgttttgattggtaccaaaaatacggtgatgttgttgtatttgatactacatacaaggtcaattcttatgaaatgccatttgggattttt 12631894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 146
Target Start/End: Complemental strand, 27107690 - 27107598
Alignment:
Q  54 ttgttttgaattgtaccaacagtatggagatgctgttgcatttgatactacttacaaggtaaatacttataatatgccttttggcatttttgt 146  Q
    ||||||||| | ||||||| | || || |||| |||||  ||||||||||| |||||||| ||| ||||| | ||||| ||||| ||||||||    
T  27107690 ttgttttgattggtaccaaaaatacggtgatgttgttgtgtttgatactacatacaaggttaattcttatgaaatgccatttgggatttttgt 27107598  T

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