View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3363_low_16 (Length: 334)

Name: NF3363_low_16
Description: NF3363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3363_low_16
NF3363_low_16
[»] scaffold0598 (1 HSPs)
scaffold0598 (19-301)||(7816-8109)
[»] chr4 (30 HSPs)
chr4 (15-98)||(20743255-20743338)
chr4 (23-94)||(31243529-31243600)
chr4 (15-79)||(24343506-24343570)
chr4 (17-79)||(3144648-3144710)
chr4 (15-57)||(32910550-32910592)
chr4 (15-68)||(34515881-34515934)
chr4 (15-57)||(21945502-21945544)
chr4 (15-95)||(7012065-7012145)
chr4 (22-78)||(30520433-30520490)
chr4 (16-57)||(37203264-37203305)
chr4 (23-76)||(53968553-53968606)
chr4 (15-75)||(16402211-16402271)
chr4 (99-135)||(19230241-19230277)
chr4 (17-57)||(29205445-29205485)
chr4 (15-62)||(5654604-5654651)
chr4 (16-95)||(6273944-6274023)
chr4 (75-126)||(35239178-35239229)
chr4 (16-62)||(18513254-18513300)
chr4 (97-135)||(30299010-30299048)
chr4 (97-135)||(30327878-30327916)
chr4 (97-135)||(40784034-40784072)
chr4 (16-62)||(43299984-43300030)
chr4 (16-62)||(43300616-43300662)
chr4 (23-57)||(50848321-50848355)
chr4 (97-135)||(53381530-53381568)
chr4 (24-57)||(11596370-11596403)
chr4 (24-57)||(28964266-28964299)
chr4 (24-57)||(54580041-54580074)
chr4 (99-139)||(824212-824252)
chr4 (22-62)||(10546154-10546194)
[»] chr7 (27 HSPs)
chr7 (23-138)||(29812595-29812716)
chr7 (11-72)||(13427571-13427632)
chr7 (15-80)||(23930218-23930283)
chr7 (14-75)||(23751898-23751959)
chr7 (15-80)||(43249992-43250057)
chr7 (22-80)||(10230068-10230126)
chr7 (15-80)||(7133273-7133338)
chr7 (15-80)||(38804550-38804615)
chr7 (16-62)||(44020975-44021021)
chr7 (15-80)||(4017789-4017854)
chr7 (16-81)||(17780078-17780143)
chr7 (15-57)||(1885572-1885614)
chr7 (21-79)||(5938477-5938535)
chr7 (17-75)||(12278836-12278894)
chr7 (15-57)||(24339641-24339683)
chr7 (15-57)||(25481901-25481943)
chr7 (16-62)||(38134419-38134465)
chr7 (99-136)||(1433542-1433579)
chr7 (108-137)||(14729795-14729824)
chr7 (93-134)||(18035806-18035847)
chr7 (19-72)||(22683758-22683811)
chr7 (24-57)||(26033479-26033512)
chr7 (97-134)||(32287404-32287441)
chr7 (24-56)||(8234154-8234186)
chr7 (17-57)||(18233616-18233656)
chr7 (22-62)||(30606077-30606117)
chr7 (98-138)||(40131936-40131976)
[»] chr3 (38 HSPs)
chr3 (1-95)||(52369760-52369854)
chr3 (7-80)||(12704652-12704725)
chr3 (15-75)||(15864832-15864892)
chr3 (22-70)||(21149073-21149121)
chr3 (15-75)||(24205041-24205101)
chr3 (15-79)||(25074788-25074852)
chr3 (23-73)||(3730167-3730217)
chr3 (15-57)||(16789668-16789710)
chr3 (17-78)||(21211289-21211350)
chr3 (23-80)||(25892467-25892524)
chr3 (15-72)||(34189426-34189483)
chr3 (23-80)||(41319305-41319362)
chr3 (25-57)||(20503474-20503506)
chr3 (22-62)||(20691325-20691365)
chr3 (24-134)||(34910325-34910435)
chr3 (15-62)||(21861568-21861615)
chr3 (17-80)||(25326427-25326490)
chr3 (17-56)||(25652050-25652089)
chr3 (24-70)||(1830351-1830397)
chr3 (15-57)||(3164043-3164085)
chr3 (15-57)||(4987309-4987351)
chr3 (15-57)||(7928449-7928491)
chr3 (17-51)||(11093571-11093605)
chr3 (15-57)||(14979180-14979222)
chr3 (21-75)||(25365467-25365521)
chr3 (19-57)||(25948905-25948943)
chr3 (15-57)||(49651804-49651846)
chr3 (24-58)||(51206370-51206404)
chr3 (24-57)||(10954960-10954993)
chr3 (24-57)||(26508118-26508151)
chr3 (24-57)||(28918009-28918042)
chr3 (97-133)||(4987222-4987258)
chr3 (97-137)||(8903516-8903556)
chr3 (15-79)||(14223849-14223913)
chr3 (28-80)||(21367289-21367341)
chr3 (99-135)||(21861658-21861694)
chr3 (11-63)||(28779557-28779609)
chr3 (24-80)||(34307775-34307831)
[»] chr2 (27 HSPs)
chr2 (15-95)||(11307984-11308063)
chr2 (11-92)||(30563404-30563485)
chr2 (16-95)||(23354632-23354711)
chr2 (15-92)||(25544480-25544557)
chr2 (15-77)||(10535757-10535819)
chr2 (22-79)||(24011042-24011099)
chr2 (16-75)||(12748684-12748743)
chr2 (16-95)||(23354975-23355054)
chr2 (15-57)||(30404868-30404910)
chr2 (24-57)||(12668441-12668474)
chr2 (15-80)||(19573977-19574042)
chr2 (15-80)||(37986778-37986843)
chr2 (15-51)||(25317136-25317172)
chr2 (22-69)||(34006997-34007044)
chr2 (97-135)||(18840953-18840991)
chr2 (15-57)||(21374717-21374759)
chr2 (15-57)||(28677908-28677950)
chr2 (15-57)||(30298465-30298507)
chr2 (17-62)||(18570973-18571018)
chr2 (24-57)||(30335425-30335458)
chr2 (24-57)||(30717548-30717581)
chr2 (16-57)||(40681982-40682023)
chr2 (16-53)||(42418869-42418906)
chr2 (98-139)||(42511318-42511359)
chr2 (22-81)||(6698453-6698513)
chr2 (23-51)||(24894492-24894520)
chr2 (69-136)||(44635546-44635613)
[»] chr6 (28 HSPs)
chr6 (16-79)||(34446565-34446628)
chr6 (24-136)||(30781232-30781345)
chr6 (15-115)||(34229453-34229548)
chr6 (9-73)||(12235521-12235585)
chr6 (15-78)||(6389742-6389805)
chr6 (15-75)||(12086345-12086405)
chr6 (16-57)||(28715295-28715336)
chr6 (17-85)||(19602171-19602239)
chr6 (17-80)||(17168458-17168521)
chr6 (7-52)||(25010225-25010270)
chr6 (22-57)||(17168900-17168935)
chr6 (15-57)||(5970126-5970168)
chr6 (15-57)||(7977848-7977890)
chr6 (15-57)||(12696323-12696365)
chr6 (15-57)||(16766696-16766738)
chr6 (97-135)||(34595215-34595253)
chr6 (24-57)||(10770692-10770725)
chr6 (19-80)||(26247429-26247490)
chr6 (24-57)||(31384928-31384961)
chr6 (97-134)||(31959231-31959268)
chr6 (24-57)||(34595142-34595175)
chr6 (91-135)||(4878017-4878061)
chr6 (15-71)||(6299511-6299567)
chr6 (15-71)||(6306321-6306377)
chr6 (91-135)||(6389807-6389851)
chr6 (17-57)||(7569186-7569226)
chr6 (25-57)||(16388251-16388283)
chr6 (22-78)||(34541747-34541803)
[»] chr5 (29 HSPs)
chr5 (9-80)||(43554514-43554585)
chr5 (15-93)||(18607079-18607157)
chr5 (16-57)||(4344742-4344783)
chr5 (22-79)||(5467974-5468031)
chr5 (17-57)||(24906319-24906359)
chr5 (15-79)||(39695995-39696059)
chr5 (15-57)||(13287417-13287459)
chr5 (30-80)||(26205755-26205805)
chr5 (15-57)||(38749581-38749623)
chr5 (16-57)||(18162055-18162096)
chr5 (24-73)||(31264446-31264495)
chr5 (91-135)||(17123122-17123166)
chr5 (15-63)||(42469220-42469268)
chr5 (15-62)||(2577193-2577240)
chr5 (17-75)||(7997166-7997224)
chr5 (19-73)||(18586291-18586344)
chr5 (15-57)||(21191074-21191116)
chr5 (15-57)||(43001799-43001841)
chr5 (24-57)||(6247630-6247663)
chr5 (16-57)||(6471907-6471948)
chr5 (108-137)||(17593661-17593690)
chr5 (16-73)||(18288053-18288110)
chr5 (24-57)||(21576763-21576796)
chr5 (23-80)||(25863211-25863268)
chr5 (15-56)||(28296327-28296368)
chr5 (24-57)||(39698549-39698582)
chr5 (98-134)||(3966596-3966632)
chr5 (75-135)||(6247670-6247729)
chr5 (24-76)||(21137697-21137749)
[»] chr8 (27 HSPs)
chr8 (15-91)||(44067515-44067590)
chr8 (22-78)||(8017492-8017548)
chr8 (15-75)||(1676711-1676771)
chr8 (15-95)||(13009473-13009553)
chr8 (23-91)||(13845241-13845309)
chr8 (19-75)||(35431140-35431196)
chr8 (23-79)||(40063958-40064014)
chr8 (17-91)||(16869699-16869773)
chr8 (16-53)||(30068050-30068087)
chr8 (23-79)||(14513170-14513226)
chr8 (97-137)||(22652068-22652108)
chr8 (23-75)||(39820436-39820488)
chr8 (24-67)||(18646180-18646223)
chr8 (18-73)||(28883880-28883935)
chr8 (97-135)||(29510233-29510271)
chr8 (91-137)||(39820503-39820549)
chr8 (97-135)||(40064043-40064081)
chr8 (15-57)||(41831958-41832000)
chr8 (15-72)||(3658146-3658203)
chr8 (24-57)||(4948660-4948693)
chr8 (99-132)||(13203700-13203733)
chr8 (24-57)||(25566849-25566882)
chr8 (15-80)||(26915235-26915300)
chr8 (16-57)||(28642408-28642449)
chr8 (23-95)||(3911117-3911189)
chr8 (24-56)||(6211456-6211488)
chr8 (97-137)||(24413497-24413537)
[»] chr1 (23 HSPs)
chr1 (16-80)||(42004942-42005006)
chr1 (16-77)||(21145466-21145528)
chr1 (17-73)||(22794080-22794136)
chr1 (17-80)||(6936395-6936458)
chr1 (15-80)||(40747768-40747833)
chr1 (15-72)||(48415728-48415786)
chr1 (75-135)||(22881567-22881627)
chr1 (17-57)||(42325561-42325601)
chr1 (93-137)||(48450548-48450592)
chr1 (15-57)||(113298-113340)
chr1 (15-57)||(398783-398825)
chr1 (97-135)||(9828136-9828174)
chr1 (15-57)||(17754310-17754352)
chr1 (24-62)||(30847733-30847771)
chr1 (24-57)||(1486727-1486760)
chr1 (24-57)||(6612189-6612222)
chr1 (24-57)||(18190126-18190159)
chr1 (24-57)||(24577204-24577237)
chr1 (24-57)||(40258951-40258984)
chr1 (99-135)||(7918154-7918190)
chr1 (21-57)||(11571590-11571626)
chr1 (25-57)||(18337338-18337370)
chr1 (91-135)||(34741921-34741965)
[»] scaffold0199 (1 HSPs)
scaffold0199 (15-75)||(1948-2008)
[»] scaffold0066 (1 HSPs)
scaffold0066 (15-79)||(33360-33423)
[»] scaffold0007 (1 HSPs)
scaffold0007 (15-91)||(225253-225328)
[»] scaffold0154 (1 HSPs)
scaffold0154 (97-136)||(13505-13544)
[»] scaffold1528 (1 HSPs)
scaffold1528 (15-57)||(1034-1076)
[»] scaffold0223 (1 HSPs)
scaffold0223 (15-57)||(20171-20213)
[»] scaffold0136 (1 HSPs)
scaffold0136 (15-57)||(3867-3909)
[»] scaffold0103 (1 HSPs)
scaffold0103 (15-57)||(51810-51852)
[»] scaffold0050 (1 HSPs)
scaffold0050 (15-57)||(70277-70319)
[»] scaffold0027 (1 HSPs)
scaffold0027 (15-57)||(46681-46723)
[»] scaffold0652 (1 HSPs)
scaffold0652 (97-134)||(403-440)
[»] scaffold0361 (1 HSPs)
scaffold0361 (24-57)||(14538-14571)


Alignment Details
Target: scaffold0598 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: scaffold0598
Description:

Target: scaffold0598; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 19 - 301
Target Start/End: Complemental strand, 8109 - 7816
Alignment:
Q  19 acggataataatttgaaaaaatgacataattcagtgtaaacatagatgtcgtgtcggtgtcgatgtcggacaccgacacgggacacatctaatccgagga 118  Q
    |||||||||||||||| |||||||||||||||||||||||||||| | |||||||||| ||| ||||||||| ||||||||||||||||||||| ||| |    
T  8109 acggataataatttgagaaaatgacataattcagtgtaaacataggtatcgtgtcggtttcggtgtcggacatcgacacgggacacatctaatcggagaa 8010  T
Q  119 gtgtccgtacttcatagctttggtgacaccagcaaagttcaagaataaagca-----------agcattcaattaattactctttttaatttttatccct 207  Q
    |||| ||||||||||||||| || ||||||||||||||||||| ||||||||           |||||||||||||||||||||||||||||||||||||    
T  8009 gtgtgcgtacttcatagcttcggagacaccagcaaagttcaaggataaagcaccggtaaaacaagcattcaattaattactctttttaatttttatccct 7910  T
Q  208 ttattgtttgtcttggacggttccatggcatgacattgtctacaagcaatgaaaaaccaccggaaaatactccggacaacgcgcaaagataccc 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7909 ttattgtttgtcttggacggttccatggcatgacattgtctacaagcaatgaaaaaccaccggaaaatactccggacaacgcgcaaagataccc 7816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 6e-28; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 15 - 98
Target Start/End: Complemental strand, 20743338 - 20743255
Alignment:
Q  15 cgacacggataataatttgaaaaaatgacataattcagtgtaaacatagatgtcgtgtcggtgtcgatgtcggacaccgacacg 98  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||| ||| ||||||||||||||||| ||||||||||||    
T  20743338 cgacacggataataatttgagaaaatgacataattcagtgtaatcataggtgttgtgtcggtgtcgatgtcagacaccgacacg 20743255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 94
Target Start/End: Complemental strand, 31243600 - 31243529
Alignment:
Q  23 ataataatttgaaaaaatgacataattcagtgtaaacatagatgtcgtgtcggtgtcgatgtcggacaccga 94  Q
    |||||||||||| |||||||||||||||||||||| ||||| |||| ||||||||| | |||||||||||||    
T  31243600 ataataatttgagaaaatgacataattcagtgtaatcataggtgtcatgtcggtgttggtgtcggacaccga 31243529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 24343506 - 24343570
Alignment:
Q  15 cgacacggataataatttgaaaaaatgacataattcagtgtaaacatagatgtcgtgtcggtgtc 79  Q
    |||||||||||||||||||| ||||| ||||||||||||||||  |||| |||||||||||||||    
T  24343506 cgacacggataataatttgagaaaattacataattcagtgtaattataggtgtcgtgtcggtgtc 24343570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 3144710 - 3144648
Alignment:
Q  17 acacggataataatttgaaaaaatgacataattcagtgtaaacatagatgtcgtgtcggtgtc 79  Q
    |||||||||||||||| | ||||||| |||||| ||||||| ||||| |||||||||||||||    
T  3144710 acacggataataatttcagaaaatgatataatttagtgtaatcataggtgtcgtgtcggtgtc 3144648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 32910550 - 32910592
Alignment:
Q  15 cgacacggataataatttgaaaaaatgacataattcagtgtaa 57  Q
    |||||||||||||||||||| ||||||||||||||||||||||    
T  32910550 cgacacggataataatttgagaaaatgacataattcagtgtaa 32910592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 68
Target Start/End: Complemental strand, 34515934 - 34515881
Alignment:
Q  15 cgacacggataataatttgaaaaaatgacataattcagtgtaaacatagatgtc 68  Q
    |||||||||||||||||  | |||||||||||||||||||||||||||| ||||    
T  34515934 cgacacggataataattcaagaaaatgacataattcagtgtaaacataggtgtc 34515881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 21945502 - 21945544
Alignment:
Q  15 cgacacggataataatttgaaaaaatgacataattcagtgtaa 57  Q
    |||||| | ||||||||||||||||||||||||||||||||||    
T  21945502 cgacacagctaataatttgaaaaaatgacataattcagtgtaa 21945544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 95
Target Start/End: Original strand, 7012065 - 7012145
Alignment:
Q  15 cgacacggataataatttgaaaaaatgacataattcagtgtaaacatagatgtc-gtgtcggtgtcgatgtcggacaccgac 95  Q
    |||||| ||||||||||||| |||||||||||||||||||| | ||||| | || ||||  |||||| ||||||||||||||    
T  7012065 cgacaccgataataatttgagaaaatgacataattcagtgtgatcataggtatcggtgt-tgtgtcggtgtcggacaccgac 7012145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 30520490 - 30520433
Alignment:
Q  22 gataataatttgaaaaaa-tgacataattcagtgtaaacatagatgtcgtgtcggtgt 78  Q
    |||||||||||||||||| |||||||||||||||||| ||||| ||| ||||| ||||    
T  30520490 gataataatttgaaaaaaatgacataattcagtgtaatcataggtgtagtgtcagtgt 30520433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 57
Target Start/End: Original strand, 37203264 - 37203305
Alignment:
Q  16 gacacggataataatttgaaaaaatgacataattcagtgtaa 57  Q
    ||||||| |||||||||||||||||||||||||| |||||||    
T  37203264 gacacggctaataatttgaaaaaatgacataatttagtgtaa 37203305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 53968553 - 53968606
Alignment:
Q  23 ataataatttgaaaaaatgacataattcagtgtaaacatagatgtcgtgtcggt 76  Q
    |||||||||| | |||||||||||||||||||  | ||||||||||||||||||    
T  53968553 ataataatttaagaaaatgacataattcagtgatatcatagatgtcgtgtcggt 53968606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 16402271 - 16402211
Alignment:
Q  15 cgacacggataataatttgaaaaaatgacataattcagtgtaaacatagatgtcgtgtcgg 75  Q
    |||||||||||||||||||| ||||| |||| || ||||||||  |||| |||||||||||    
T  16402271 cgacacggataataatttgagaaaataacatgatacagtgtaattatagctgtcgtgtcgg 16402211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 135
Target Start/End: Complemental strand, 19230277 - 19230241
Alignment:
Q  99 ggacacatctaatccgaggagtgtccgtacttcatag 135  Q
    ||||||||||||||||| |||||||||||||||||||    
T  19230277 ggacacatctaatccgaagagtgtccgtacttcatag 19230241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 29205445 - 29205485
Alignment:
Q  17 acacggataataatttgaaaaaatgacataattcagtgtaa 57  Q
    |||||| ||||||||||||||||| ||||||||||||||||    
T  29205445 acacggctaataatttgaaaaaatcacataattcagtgtaa 29205485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 62
Target Start/End: Complemental strand, 5654651 - 5654604
Alignment:
Q  15 cgacacggataataatttgaaaaaatgacataattcagtgtaaacata 62  Q
    |||||| ||||||||||||| |||||||||||||||| ||||| ||||    
T  5654651 cgacactgataataatttgagaaaatgacataattcaatgtaatcata 5654604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 95
Target Start/End: Original strand, 6273944 - 6274023
Alignment:
Q  16 gacacggataataatttgaaaaaatgacataattcagtgtaaacatagatgtcgtgtcggtgtcgatgtcggacaccgac 95  Q
    ||||| || |||||||||| ||||||| |||||| |||||||  ||||  ||||||||||||||| |||| |||| ||||    
T  6273944 gacacagacaataatttgagaaaatgatataatttagtgtaattatagtcgtcgtgtcggtgtcggtgtcagacatcgac 6274023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 75 - 126
Target Start/End: Original strand, 35239178 - 35239229
Alignment:
Q  75 gtgtcgatgtcggacaccgacacgggacacatctaatccgaggagtgtccgt 126  Q
    |||||| |||||||||| ||| | |||||| |||||||||||||||||||||    
T  35239178 gtgtcggtgtcggacactgaccctggacacgtctaatccgaggagtgtccgt 35239229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 18513300 - 18513254
Alignment:
Q  16 gacacggataataatttgaaaaaatgacataattcagtgtaaacata 62  Q
    ||||| ||||||||||||| |||||||||||||||| ||||| ||||    
T  18513300 gacaccgataataatttgagaaaatgacataattcaatgtaatcata 18513254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 135
Target Start/End: Original strand, 30299010 - 30299048
Alignment:
Q  97 cgggacacatctaatccgaggagtgtccgtacttcatag 135  Q
    |||||||| ||||||||||||||||||||| ||||||||    
T  30299010 cgggacacgtctaatccgaggagtgtccgtgcttcatag 30299048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 135
Target Start/End: Original strand, 30327878 - 30327916
Alignment:
Q  97 cgggacacatctaatccgaggagtgtccgtacttcatag 135  Q
    |||||||| ||||||||||||||||||||| ||||||||    
T  30327878 cgggacacgtctaatccgaggagtgtccgtgcttcatag 30327916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 135
Target Start/End: Original strand, 40784034 - 40784072
Alignment:
Q  97 cgggacacatctaatccgaggagtgtccgtacttcatag 135  Q
    ||||||||| |||||||||||||||||||| ||||||||    
T  40784034 cgggacacacctaatccgaggagtgtccgtgcttcatag 40784072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 43300030 - 43299984
Alignment:
Q  16 gacacggataataatttgaaaaaatgacataattcagtgtaaacata 62  Q
    ||||||||||||||||||| ||||| |||||||||| ||||| ||||    
T  43300030 gacacggataataatttgagaaaattacataattcaatgtaatcata 43299984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 62
Target Start/End: Original strand, 43300616 - 43300662
Alignment:
Q  16 gacacggataataatttgaaaaaatgacataattcagtgtaaacata 62  Q
    ||||||||||||||||||| ||||| |||||||||| ||||| ||||    
T  43300616 gacacggataataatttgagaaaattacataattcaatgtaatcata 43300662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 57
Target Start/End: Complemental strand, 50848355 - 50848321
Alignment:
Q  23 ataataatttgaaaaaatgacataattcagtgtaa 57  Q
    |||||||||||||||||||| ||||||||||||||    
T  50848355 ataataatttgaaaaaatgatataattcagtgtaa 50848321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 135
Target Start/End: Complemental strand, 53381568 - 53381530
Alignment:
Q  97 cgggacacatctaatccgaggagtgtccgtacttcatag 135  Q
    ||||||||| |||||||||||||||||||| ||||||||    
T  53381568 cgggacacacctaatccgaggagtgtccgtgcttcatag 53381530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 57
Target Start/End: Complemental strand, 11596403 - 11596370
Alignment:
Q  24 taataatttgaaaaaatgacataattcagtgtaa 57  Q
    ||||||||||||||||| ||||||||||||||||    
T  11596403 taataatttgaaaaaatcacataattcagtgtaa 11596370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 57
Target Start/End: Complemental strand, 28964299 - 28964266
Alignment:
Q  24 taataatttgaaaaaatgacataattcagtgtaa 57  Q
    ||||||||||||||||| ||||||||||||||||    
T  28964299 taataatttgaaaaaatcacataattcagtgtaa 28964266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 57
Target Start/End: Complemental strand, 54580074 - 54580041
Alignment:
Q  24 taataatttgaaaaaatgacataattcagtgtaa 57  Q
    ||||||||||||||||| ||||||||||||||||    
T  54580074 taataatttgaaaaaatcacataattcagtgtaa 54580041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 139
Target Start/End: Complemental strand, 824252 - 824212
Alignment:
Q  99 ggacacatctaatccgaggagtgtccgtacttcatagcttt 139  Q
    |||||| ||||||||||||| ||||||| ||||||||||||    
T  824252 ggacacgtctaatccgaggactgtccgtgcttcatagcttt 824212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 10546154 - 10546194
Alignment:
Q  22 gataataatttgaaaaaatgacataattcagtgtaaacata 62  Q
    ||||||||||||| |||||||||||||||| ||||| ||||    
T  10546154 gataataatttgagaaaatgacataattcaatgtaatcata 10546194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 6e-25; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 23 - 138
Target Start/End: Complemental strand, 29812716 - 29812595
Alignment:
Q  23 ataataatttgaaaaaatgacataattcagtgtaaacatagatgtcgtgtcggtgtcgatgtcgg------acaccgacacgggacacatctaatccgag 116  Q
    |||||||||||| ||||||| |||||| ||||||| ||||| |||||||||||||||| ||||||      |||||||||||||||||  ||||||||||    
T  29812716 ataataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcggtgtcggtgtcggtgtcggacaccgacacgggacacgcctaatccgag 29812617  T
Q  117 gagtgtccgtacttcatagctt 138  Q
     ||||||||| |||||||||||    
T  29812616 aagtgtccgtgcttcatagctt 29812595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 11 - 72
Target Start/End: Original strand, 13427571 - 13427632
Alignment:
Q  11 gacacgacacggataataatttgaaaaaatgacataattcagtgtaaacatagatgtcgtgt 72  Q
    ||||||||||||| ||||||||||||||||||||||||| ||| ||| ||||||||||||||    
T  13427571 gacacgacacggaaaataatttgaaaaaatgacataatttagtataatcatagatgtcgtgt 13427632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 23930218 - 23930283
Alignment:
Q  15 cgacacggataataatttgaaaaaatgacataattcagtgtaaacatagatgtcgtgtcggtgtcg 80  Q
    ||||||||||| |||||||| |||||||||||||||||||||| ||||| ||| ||||||||||||    
T  23930218 cgacacggatagtaatttgagaaaatgacataattcagtgtaatcataggtgttgtgtcggtgtcg 23930283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 23751898 - 23751959
Alignment:
Q  14 acgacacggataataatttgaaaaaatgacataattcagtgtaaacatagatgtcgtgtcgg 75  Q
    ||||||||||||||||||||| ||||||| |||||| ||||||| ||||| |||||||||||    
T  23751898 acgacacggataataatttgataaaatgatataatttagtgtaatcataggtgtcgtgtcgg 23751959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 43249992 - 43250057
Alignment:
Q  15 cgacacggataataatttgaaaaaatgacataattcagtgtaaacatagatgtcgtgtcggtgtcg 80  Q
    |||||||||||||||||||| ||||||||||||| ||||||||  |||  ||||||||||||||||    
T  43249992 cgacacggataataatttgagaaaatgacataatacagtgtaattataagtgtcgtgtcggtgtcg 43250057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 22 - 80
Target Start/End: Complemental strand, 10230126 - 10230068
Alignment:
Q  22 gataataatttgaaaaaatgacataattcagtgtaaacatagatgtcgtgtcggtgtcg 80  Q
    |||||||||||||  |||||||||||||||||||||  ||||||||||||| |||||||    
T  10230126 gataataatttgaggaaatgacataattcagtgtaagtatagatgtcgtgttggtgtcg 10230068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 80
Target Start/End: Complemental strand, 7133338 - 7133273
Alignment:
Q  15 cgacacggataataatttgaaaaaatgacataattcagtgtaaacatagatgtcgtgtcggtgtcg 80  Q
    |||||| ||| ||||||||| |||||||||||||||||||||| ||||| ||  ||||||||||||    
T  7133338 cgacacagatgataatttgagaaaatgacataattcagtgtaatcataggtggtgtgtcggtgtcg 7133273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 80
Target Start/End: Complemental strand, 38804615 - 38804550
Alignment:
Q  15 cgacacggataataatttgaaaaaatgacataattcagtgtaaacatagatgtcgtgtcggtgtcg 80  Q
    |||||||||||||||||| | ||||||||||||| ||| |||| ||||| |||||||| |||||||    
T  38804615 cgacacggataataatttcagaaaatgacataatccagggtaatcataggtgtcgtgttggtgtcg 38804550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 62
Target Start/End: Original strand, 44020975 - 44021021
Alignment:
Q  16 gacacggataataatttgaaaaaatgacataattcagtgtaaacata 62  Q
    ||||||||||||||||||||||||| |||||||||| ||||| ||||    
T  44020975 gacacggataataatttgaaaaaattacataattcaatgtaaccata 44021021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 80
Target Start/End: Complemental strand, 4017854 - 4017789
Alignment:
Q  15 cgacacggataataatttgaaaaaatgacataattcagtgtaaacatagatgtcgtgtcggtgtcg 80  Q
    |||||||||||||||||||| |||| || |||||| ||||||| ||||  |||||||| |||||||    
T  4017854 cgacacggataataatttgagaaaacgatataatttagtgtaatcataagtgtcgtgttggtgtcg 4017789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 17780143 - 17780078
Alignment:
Q  16 gacacggataataatttgaaaaaatgacataattcagtgtaaacatagatgtcgtgtcggtgtcga 81  Q
    |||| |||||||||||| | |||||||||||||||  |||||  |||| |||||||||||||||||    
T  17780143 gacatggataataatttaagaaaatgacataattctatgtaataataggtgtcgtgtcggtgtcga 17780078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 1885572 - 1885614
Alignment:
Q  15 cgacacggataataatttgaaaaaatgacataattcagtgtaa 57  Q
    |||||||||||| | |||||||||||||||||||||| |||||    
T  1885572 cgacacggataaaattttgaaaaaatgacataattcaatgtaa 1885614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 5938477 - 5938535
Alignment:
Q  21 ggataataatttgaaaaaatgacataattcagtgtaaacatagatgtcgtgtcggtgtc 79  Q
    |||||||||||||| ||||| |||||||||||| |||  |||| ||| |||||||||||    
T  5938477 ggataataatttgataaaataacataattcagtataattataggtgttgtgtcggtgtc 5938535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 12278836 - 12278894
Alignment:
Q  17 acacggataataatttgaaaaaatgacataattcagtgtaaacatagatgtcgtgtcgg 75  Q
    |||| ||||||||||| | ||||||||||||||||||||||  |||  |||||||||||    
T  12278836 acactgataataatttaagaaaatgacataattcagtgtaattatatgtgtcgtgtcgg 12278894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 24339641 - 24339683
Alignment:
Q  15 cgacacggataataatttgaaaaaatgacataattcagtgtaa 57  Q
    |||||| | ||||||||||||||||| ||||||||||||||||    
T  24339641 cgacacagctaataatttgaaaaaatcacataattcagtgtaa 24339683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 25481901 - 25481943
Alignment:
Q  15 cgacacggataataatttgaaaaaatgacataattcagtgtaa 57  Q
    |||||| | ||||||||||||||||| ||||||||||||||||    
T  25481901 cgacacagctaataatttgaaaaaatcacataattcagtgtaa 25481943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 38134465 - 38134419
Alignment:
Q  16 gacacggataataatttgaaaaaatgacataattcagtgtaaacata 62  Q
    ||||| ||||||||||||| |||||||||||||||| ||||| ||||    
T  38134465 gacaccgataataatttgagaaaatgacataattcaatgtaatcata 38134419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 136
Target Start/End: Original strand, 1433542 - 1433579
Alignment:
Q  99 ggacacatctaatccgaggagtgtccgtacttcatagc 136  Q
    |||||| ||||||||||||||||||||| |||||||||    
T  1433542 ggacacgtctaatccgaggagtgtccgtgcttcatagc 1433579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 137
Target Start/End: Original strand, 14729795 - 14729824
Alignment:
Q  108 taatccgaggagtgtccgtacttcatagct 137  Q
    ||||||||||||||||||||||||||||||    
T  14729795 taatccgaggagtgtccgtacttcatagct 14729824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 134
Target Start/End: Complemental strand, 18035847 - 18035806
Alignment:
Q  93 gacacgggacacatctaatccgaggagtgtccgtacttcata 134  Q
    ||||||| |||| ||||||||||||||||||||| |||||||    
T  18035847 gacacggaacacgtctaatccgaggagtgtccgtgcttcata 18035806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 22683811 - 22683758
Alignment:
Q  19 acggataataatttgaaaaaatgacataattcagtgtaaacatagatgtcgtgt 72  Q
    |||||||||||||||| || |||| ||||||||||| || ||||| ||||||||    
T  22683811 acggataataatttgagaatatgatataattcagtgcaatcataggtgtcgtgt 22683758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 57
Target Start/End: Complemental strand, 26033512 - 26033479
Alignment:
Q  24 taataatttgaaaaaatgacataattcagtgtaa 57  Q
    ||||||||||||||||| ||||||||||||||||    
T  26033512 taataatttgaaaaaatcacataattcagtgtaa 26033479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 134
Target Start/End: Complemental strand, 32287441 - 32287404
Alignment:
Q  97 cgggacacatctaatccgaggagtgtccgtacttcata 134  Q
    ||||||||| |||||||||||||||||||| |||||||    
T  32287441 cgggacacacctaatccgaggagtgtccgtgcttcata 32287404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 56
Target Start/End: Original strand, 8234154 - 8234186
Alignment:
Q  24 taataatttgaaaaaatgacataattcagtgta 56  Q
    ||||||||||||||||| |||||||||||||||    
T  8234154 taataatttgaaaaaataacataattcagtgta 8234186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 18233656 - 18233616
Alignment:
Q  17 acacggataataatttgaaaaaatgacataattcagtgtaa 57  Q
    |||| |||| |||||||| ||||||||||||||||||||||    
T  18233656 acacagatagtaatttgagaaaatgacataattcagtgtaa 18233616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 30606117 - 30606077
Alignment:
Q  22 gataataatttgaaaaaatgacataattcagtgtaaacata 62  Q
    ||||||||||| |||||||||||||||||| ||||| ||||    
T  30606117 gataataatttcaaaaaatgacataattcaatgtaaccata 30606077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 138
Target Start/End: Complemental strand, 40131976 - 40131936
Alignment:
Q  98 gggacacatctaatccgaggagtgtccgtacttcatagctt 138  Q
    ||||||| |||||||||||||||||| || |||||||||||    
T  40131976 gggacacgtctaatccgaggagtgtctgtgcttcatagctt 40131936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 6e-25; HSPs: 38)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 52369760 - 52369854
Alignment:
Q  1 acggataccggacacgacacggataataatttgaaaaaatgacataattcagtgtaaacatagatgtcgtgtcggtgtcgatgtcggacaccgac 95  Q
    ||||| ||||||||||||| |||||||||||||| ||||| |||||||||| ||||| ||||| |||||||||||||||| | ||||||||||||    
T  52369760 acggacaccggacacgacatggataataatttgagaaaattacataattcaatgtaatcataggtgtcgtgtcggtgtcggtatcggacaccgac 52369854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 7 - 80
Target Start/End: Complemental strand, 12704725 - 12704652
Alignment:
Q  7 accggacacgacacggataataatttgaaaaaatgacataattcagtgtaaacatagatgtcgtgtcggtgtcg 80  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||    
T  12704725 accggacacaacacggataataatttgaaaaaatgacataattcaatgtaatcataggtgtcgtgtcggtgtcg 12704652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 15864832 - 15864892
Alignment:
Q  15 cgacacggataataatttgaaaaaatgacataattcagtgtaaacatagatgtcgtgtcgg 75  Q
    |||||||||||||||||||||||||||| |||||| ||||||| ||||| |||||||||||    
T  15864832 cgacacggataataatttgaaaaaatgatataatttagtgtaatcataggtgtcgtgtcgg 15864892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 21149073 - 21149121
Alignment:
Q  22 gataataatttgaaaaaatgacataattcagtgtaaacatagatgtcgt 70  Q
    ||||||||||||| |||||||||||||||||||||| || |||||||||    
T  21149073 gataataatttgagaaaatgacataattcagtgtaatcaaagatgtcgt 21149121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 24205101 - 24205041
Alignment:
Q  15 cgacacggataataatttgaaaaaatgacataattcagtgtaaacatagatgtcgtgtcgg 75  Q
    |||||||||||||||||||| ||||||||||||| ||||||||  |||  |||||||||||    
T  24205101 cgacacggataataatttgagaaaatgacataatacagtgtaattataagtgtcgtgtcgg 24205041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 25074788 - 25074852
Alignment:
Q  15 cgacacggataataatttgaaaaaatgacataattcagtgtaaacatagatgtcgtgtcggtgtc 79  Q
    |||||| ||||||||||||| |||||||||||||| ||||||| |||||  || |||||||||||    
T  25074788 cgacaccgataataatttgagaaaatgacataattgagtgtaatcataggcgttgtgtcggtgtc 25074852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 73
Target Start/End: Complemental strand, 3730217 - 3730167
Alignment:
Q  23 ataataatttgaaaaaatgacataattcagtgtaaacatagatgtcgtgtc 73  Q
    |||||||||||| | |||||||||||||||||||| ||||| |||||||||    
T  3730217 ataataatttgagataatgacataattcagtgtaatcataggtgtcgtgtc 3730167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 16789710 - 16789668
Alignment:
Q  15 cgacacggataataatttgaaaaaatgacataattcagtgtaa 57  Q
    |||||| ||||||||||||| ||||||||||||||||||||||    
T  16789710 cgacacagataataatttgagaaaatgacataattcagtgtaa 16789668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 21211289 - 21211350
Alignment:
Q  17 acacggataataatttgaaaaaatgacataattcagtgtaaacatagatgtcgtgtcggtgt 78  Q
    |||||||||||||||||| ||||| ||||| ||||||||||  || | ||||||||||||||    
T  21211289 acacggataataatttgagaaaattacatagttcagtgtaattatgggtgtcgtgtcggtgt 21211350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 80
Target Start/End: Original strand, 25892467 - 25892524
Alignment:
Q  23 ataataatttgaaaaaatgacataattcagtgtaaacatagatgtcgtgtcggtgtcg 80  Q
    |||||||||| | ||||||| |||||||||||||| ||||| ||||||||| ||||||    
T  25892467 ataataatttaagaaaatgatataattcagtgtaatcataggtgtcgtgtcagtgtcg 25892524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 72
Target Start/End: Original strand, 34189426 - 34189483
Alignment:
Q  15 cgacacggataataatttgaaaaaatgacataattcagtgtaaacatagatgtcgtgt 72  Q
    |||||| ||||||||||||| ||||||||||| |||||||||| | ||| ||||||||    
T  34189426 cgacacagataataatttgagaaaatgacatatttcagtgtaatcgtaggtgtcgtgt 34189483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 41319362 - 41319305
Alignment:
Q  23 ataataatttgaaaaaatgacataattcagtgtaaacatagatgtcgtgtcggtgtcg 80  Q
    ||||||||||||||||||||||||||||| |||||   ||  ||||||||||||||||    
T  41319362 ataataatttgaaaaaatgacataattcaatgtaattgtatgtgtcgtgtcggtgtcg 41319305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 57
Target Start/End: Original strand, 20503474 - 20503506
Alignment:
Q  25 aataatttgaaaaaatgacataattcagtgtaa 57  Q
    |||||||||||||||||||||||||||||||||    
T  20503474 aataatttgaaaaaatgacataattcagtgtaa 20503506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 20691325 - 20691365
Alignment:
Q  22 gataataatttgaaaaaatgacataattcagtgtaaacata 62  Q
    ||||||||||||| |||||||||||||||||||||| ||||    
T  20691325 gataataatttgagaaaatgacataattcagtgtaatcata 20691365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 134
Target Start/End: Original strand, 34910325 - 34910435
Alignment:
Q  24 taataatttgaaaaaatgacataattcagtgtaaacatagatgtc-gtgtcggtgtcgatgtcggacaccgaca-cgggacacatctaatccgaggagtg 121  Q
    ||||||||||||||||| ||||||||||||||||  | |   ||| ||||| || ||| |||||||||  |||| |||||||| ||||||||||||||||    
T  34910325 taataatttgaaaaaatcacataattcagtgtaattacaagagtcggtgtc-gtatcggtgtcggaca-tgacaccgggacacgtctaatccgaggagtg 34910422  T
Q  122 tccgtacttcata 134  Q
    ||||| |||||||    
T  34910423 tccgtgcttcata 34910435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 62
Target Start/End: Original strand, 21861568 - 21861615
Alignment:
Q  15 cgacacggataataatttgaaaaaatgacataattcagtgtaaacata 62  Q
    |||||| ||||| |||||| ||||||||||||||||||||||| ||||    
T  21861568 cgacacagataacaatttggaaaaatgacataattcagtgtaatcata 21861615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 25326427 - 25326490
Alignment:
Q  17 acacggataataatttgaaaaaatgacataattcagtgtaaacatagatgtcgtgtcggtgtcg 80  Q
    |||| ||||||||||| ||||||| | |||||| |||||||  ||||||||||||| |||||||    
T  25326427 acacagataataatttaaaaaaataatataatttagtgtaattatagatgtcgtgttggtgtcg 25326490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 25652089 - 25652050
Alignment:
Q  17 acacggataataatttgaaaaaatgacataattcagtgta 56  Q
    |||||||||||||||||| ||||||| |||||||||||||    
T  25652089 acacggataataatttgagaaaatgatataattcagtgta 25652050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 1830351 - 1830397
Alignment:
Q  24 taataatttgaaaaaatgacataattcagtgtaaacatagatgtcgt 70  Q
    ||||||||| | |||||||||||||||||||||| ||||| ||||||    
T  1830351 taataatttaagaaaatgacataattcagtgtaatcataggtgtcgt 1830397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 3164085 - 3164043
Alignment:
Q  15 cgacacggataataatttgaaaaaatgacataattcagtgtaa 57  Q
    |||||| | ||||||||||||||||| ||||||||||||||||    
T  3164085 cgacacagctaataatttgaaaaaatcacataattcagtgtaa 3164043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 4987351 - 4987309
Alignment:
Q  15 cgacacggataataatttgaaaaaatgacataattcagtgtaa 57  Q
    |||||| | ||||||||||||||||| ||||||||||||||||    
T  4987351 cgacacagctaataatttgaaaaaatcacataattcagtgtaa 4987309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 7928449 - 7928491
Alignment:
Q  15 cgacacggataataatttgaaaaaatgacataattcagtgtaa 57  Q
    |||||| | ||||||||||||||||| ||||||||||||||||    
T  7928449 cgacaccgctaataatttgaaaaaatcacataattcagtgtaa 7928491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 11093571 - 11093605
Alignment:
Q  17 acacggataataatttgaaaaaatgacataattca 51  Q
    |||| ||||||||||||||||||||||||||||||    
T  11093571 acactgataataatttgaaaaaatgacataattca 11093605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 14979180 - 14979222
Alignment:
Q  15 cgacacggataataatttgaaaaaatgacataattcagtgtaa 57  Q
    |||||| | ||||||||||||||||| ||||||||||||||||    
T  14979180 cgacacagctaataatttgaaaaaatcacataattcagtgtaa 14979222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 75
Target Start/End: Original strand, 25365467 - 25365521
Alignment:
Q  21 ggataataatttgaaaaaatgacataattcagtgtaaacatagatgtcgtgtcgg 75  Q
    |||||||||||||| || |||||||||||| |||||| ||||  |||||||||||    
T  25365467 ggataataatttgagaatatgacataattcggtgtaatcataagtgtcgtgtcgg 25365521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 25948943 - 25948905
Alignment:
Q  19 acggataataatttgaaaaaatgacataattcagtgtaa 57  Q
    |||| ||||||||||||||||| ||||||||||||||||    
T  25948943 acggctaataatttgaaaaaatcacataattcagtgtaa 25948905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 49651846 - 49651804
Alignment:
Q  15 cgacacggataataatttgaaaaaatgacataattcagtgtaa 57  Q
    |||||||| ||||||||||||||||| |||||||||| |||||    
T  49651846 cgacacggctaataatttgaaaaaatcacataattcactgtaa 49651804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 58
Target Start/End: Complemental strand, 51206404 - 51206370
Alignment:
Q  24 taataatttgaaaaaatgacataattcagtgtaaa 58  Q
    ||||||||||||||||| |||||||||||||||||    
T  51206404 taataatttgaaaaaatcacataattcagtgtaaa 51206370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 57
Target Start/End: Original strand, 10954960 - 10954993
Alignment:
Q  24 taataatttgaaaaaatgacataattcagtgtaa 57  Q
    ||||||||||||||||| ||||||||||||||||    
T  10954960 taataatttgaaaaaatcacataattcagtgtaa 10954993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 57
Target Start/End: Original strand, 26508118 - 26508151
Alignment:
Q  24 taataatttgaaaaaatgacataattcagtgtaa 57  Q
    ||||||||||||||||| ||||||||||||||||    
T  26508118 taataatttgaaaaaatcacataattcagtgtaa 26508151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 57
Target Start/End: Original strand, 28918009 - 28918042
Alignment:
Q  24 taataatttgaaaaaatgacataattcagtgtaa 57  Q
    ||||||||||||||||| ||||||||||||||||    
T  28918009 taataatttgaaaaaatcacataattcagtgtaa 28918042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 133
Target Start/End: Complemental strand, 4987258 - 4987222
Alignment:
Q  97 cgggacacatctaatccgaggagtgtccgtacttcat 133  Q
    ||||||||  |||||||||||||||||||||||||||    
T  4987258 cgggacacgcctaatccgaggagtgtccgtacttcat 4987222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 137
Target Start/End: Original strand, 8903516 - 8903556
Alignment:
Q  97 cgggacacatctaatccgaggagtgtccgtacttcatagct 137  Q
    ||||||||| |||||||||||||||| ||| ||||||||||    
T  8903516 cgggacacacctaatccgaggagtgttcgtgcttcatagct 8903556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 14223913 - 14223849
Alignment:
Q  15 cgacacggataataatttgaaaaaatgacataattcagtgtaaacatagatgtcgtgtcggtgtc 79  Q
    |||||| ||||||||||||| |||| || |||||| ||||||  ||||  |||||||||||||||    
T  14223913 cgacacagataataatttgagaaaacgatataatttagtgtattcataagtgtcgtgtcggtgtc 14223849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 80
Target Start/End: Original strand, 21367289 - 21367341
Alignment:
Q  28 aatttgaaaaaatgacataattcagtgtaaacatagatgtcgtgtcggtgtcg 80  Q
    ||||||| |||||||||||||| ||||||| ||| | ||| ||||||||||||    
T  21367289 aatttgagaaaatgacataatttagtgtaatcatggttgttgtgtcggtgtcg 21367341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 135
Target Start/End: Original strand, 21861658 - 21861694
Alignment:
Q  99 ggacacatctaatccgaggagtgtccgtacttcatag 135  Q
    ||||||| |||||||||||||||||||| ||||||||    
T  21861658 ggacacacctaatccgaggagtgtccgtgcttcatag 21861694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 28779557 - 28779609
Alignment:
Q  11 gacacgacacggataataatttgaaaaaatgacataattcagtgtaaacatag 63  Q
    ||||||||||  |||||||  ||| |||||||||||||||||||||| |||||    
T  28779557 gacacgacaccaataataacatgataaaatgacataattcagtgtaatcatag 28779609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 34307831 - 34307775
Alignment:
Q  24 taataatttgaaaaaatgacataattcagtgtaaacatagatgtcgtgtcggtgtcg 80  Q
    ||||||||||| ||||| ||||| ||||||||||  |||  ||||||||||||||||    
T  34307831 taataatttgagaaaatcacatatttcagtgtaattataagtgtcgtgtcggtgtcg 34307775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 9e-24; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 15 - 95
Target Start/End: Complemental strand, 11308063 - 11307984
Alignment:
Q  15 cgacacggataataatttgaaaaaatgacataattcagtgtaaacatagatgtcgtgtcggtgtcgatgtcggacaccgac 95  Q
    ||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||| ||||||||||    
T  11308063 cgacacggata-taatttgaaaaaatgacataattcagtgtaatcataggtgtcgtgtcggtgtcggtgttggacaccgac 11307984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 92
Target Start/End: Original strand, 30563404 - 30563485
Alignment:
Q  11 gacacgacacggataataatttgaaaaaatgacataattcagtgtaaacatagatgtcgtgtcggtgtcgatgtcggacacc 92  Q
    |||||||||||||||||||||||| |||||||||||||||| |||||  |||| ||| |||||||||||  |||||||||||    
T  30563404 gacacgacacggataataatttgagaaaatgacataattcaatgtaactataggtgttgtgtcggtgtcagtgtcggacacc 30563485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 95
Target Start/End: Complemental strand, 23354711 - 23354632
Alignment:
Q  16 gacacggataataatttgaaaaaatgacataattcagtgtaaacatagatgtcgtgtcggtgtcgatgtcggacaccgac 95  Q
    ||||| ||||||||||||| ||||||| |||||| ||||||| ||||| ||||||||||||||||  |||||||||||||    
T  23354711 gacacagataataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcggtgtcggggtcggacaccgac 23354632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 15 - 92
Target Start/End: Original strand, 25544480 - 25544557
Alignment:
Q  15 cgacacggataataatttgaaaaaatgacataattcagtgtaaacatagatgtcgtgtcggtgtcgatgtcggacacc 92  Q
    ||||||| |||||||||||| ||||||| |||||||||||||| ||||| |||||||||||||||  |||| ||||||    
T  25544480 cgacacgtataataatttgagaaaatgatataattcagtgtaatcataggtgtcgtgtcggtgtcagtgtcagacacc 25544557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 15 - 77
Target Start/End: Complemental strand, 10535819 - 10535757
Alignment:
Q  15 cgacacggataataatttgaaaaaatgacataattcagtgtaaacatagatgtcgtgtcggtg 77  Q
    |||||| ||||||||||||| |||||||||||||||||||||| ||||  |||||||| ||||    
T  10535819 cgacaccgataataatttgagaaaatgacataattcagtgtaatcataagtgtcgtgttggtg 10535757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 79
Target Start/End: Original strand, 24011042 - 24011099
Alignment:
Q  22 gataataatttgaaaaaatgacataattcagtgtaaacatagatgtcgtgtcggtgtc 79  Q
    ||||||||||||| |||||||||||||| ||||||| ||||| ||||| |||||||||    
T  24011042 gataataatttgagaaaatgacataatttagtgtaatcataggtgtcgcgtcggtgtc 24011099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 12748684 - 12748743
Alignment:
Q  16 gacacggataataatttgaaaaaatgacataattcagtgtaaacatagatgtcgtgtcgg 75  Q
    |||| |||||||||||||| ||||||||||| |||||||||| ||||| ||| |||||||    
T  12748684 gacatggataataatttgagaaaatgacatagttcagtgtaatcataggtgttgtgtcgg 12748743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 95
Target Start/End: Complemental strand, 23355054 - 23354975
Alignment:
Q  16 gacacggataataatttgaaaaaatgacataattcagtgtaaacatagatgtcgtgtcggtgtcgatgtcggacaccgac 95  Q
    ||||| ||||||||||||| ||||||| |||||| |||| || ||||| |||| |||||||||||  || ||||||||||    
T  23355054 gacacagataataatttgagaaaatgatataatttagtgcaatcataggtgtcatgtcggtgtcggggttggacaccgac 23354975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 30404910 - 30404868
Alignment:
Q  15 cgacacggataataatttgaaaaaatgacataattcagtgtaa 57  Q
    |||||||| ||||||||||||||||| ||||||||||||||||    
T  30404910 cgacacggttaataatttgaaaaaatcacataattcagtgtaa 30404868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 57
Target Start/End: Complemental strand, 12668474 - 12668441
Alignment:
Q  24 taataatttgaaaaaatgacataattcagtgtaa 57  Q
    ||||||||||||||||||||||||||||||||||    
T  12668474 taataatttgaaaaaatgacataattcagtgtaa 12668441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 19573977 - 19574042
Alignment:
Q  15 cgacacggataataatttgaaaaaatgacataattcagtgtaaacatagatgtcgtgtcggtgtcg 80  Q
    |||||| ||||||||||| | ||||| ||||||||||||||||  |||| || |||||||||||||    
T  19573977 cgacaccgataataatttaagaaaataacataattcagtgtaattataggtggcgtgtcggtgtcg 19574042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 37986778 - 37986843
Alignment:
Q  15 cgacacggataataatttgaaaaaatgacataattcagtgtaaacatagatgtcgtgtcggtgtcg 80  Q
    |||||| ||||||||||||||||||||| ||| || ||||||| ||||| | |||||| |||||||    
T  37986778 cgacacagataataatttgaaaaaatgatatatttgagtgtaatcataggtatcgtgttggtgtcg 37986843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 51
Target Start/End: Original strand, 25317136 - 25317172
Alignment:
Q  15 cgacacggataataatttgaaaaaatgacataattca 51  Q
    |||||| ||||||||||||||||||||||||||||||    
T  25317136 cgacaccgataataatttgaaaaaatgacataattca 25317172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 22 - 69
Target Start/End: Complemental strand, 34007044 - 34006997
Alignment:
Q  22 gataataatttgaaaaaatgacataattcagtgtaaacatagatgtcg 69  Q
    ||||||||||||| ||| |||||||||||||||||| ||||| |||||    
T  34007044 gataataatttgagaaattgacataattcagtgtaatcataggtgtcg 34006997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 135
Target Start/End: Complemental strand, 18840991 - 18840953
Alignment:
Q  97 cgggacacatctaatccgaggagtgtccgtacttcatag 135  Q
    ||||||||| |||||||||||||||||||| ||||||||    
T  18840991 cgggacacacctaatccgaggagtgtccgtgcttcatag 18840953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 21374759 - 21374717
Alignment:
Q  15 cgacacggataataatttgaaaaaatgacataattcagtgtaa 57  Q
    |||||| | ||||||||||||||||| ||||||||||||||||    
T  21374759 cgacacagctaataatttgaaaaaattacataattcagtgtaa 21374717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 28677908 - 28677950
Alignment:
Q  15 cgacacggataataatttgaaaaaatgacataattcagtgtaa 57  Q
    |||||| | ||||||||||||||||| ||||||||||||||||    
T  28677908 cgacaccgctaataatttgaaaaaatcacataattcagtgtaa 28677950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 30298507 - 30298465
Alignment:
Q  15 cgacacggataataatttgaaaaaatgacataattcagtgtaa 57  Q
    |||||| ||||||||||| | ||||||||||||||||||||||    
T  30298507 cgacaccgataataatttaataaaatgacataattcagtgtaa 30298465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 18570973 - 18571018
Alignment:
Q  17 acacggataataatttgaaaaaatgacataattcagtgtaaacata 62  Q
    |||| ||||||||||||| |||||||||||||||| ||||| ||||    
T  18570973 acaccgataataatttgagaaaatgacataattcaatgtaatcata 18571018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 57
Target Start/End: Original strand, 30335425 - 30335458
Alignment:
Q  24 taataatttgaaaaaatgacataattcagtgtaa 57  Q
    |||||||||||||||||||||||||| |||||||    
T  30335425 taataatttgaaaaaatgacataatttagtgtaa 30335458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 57
Target Start/End: Complemental strand, 30717581 - 30717548
Alignment:
Q  24 taataatttgaaaaaatgacataattcagtgtaa 57  Q
    ||||||||||||||||| ||||||||||||||||    
T  30717581 taataatttgaaaaaatcacataattcagtgtaa 30717548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 57
Target Start/End: Original strand, 40681982 - 40682023
Alignment:
Q  16 gacacggataataatttgaaaaaatgacataattcagtgtaa 57  Q
    ||||| ||||||||||||| |||||||||||||||| |||||    
T  40681982 gacaccgataataatttgagaaaatgacataattcaatgtaa 40682023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 42418869 - 42418906
Alignment:
Q  16 gacacggataataatttgaaaaaatgacataattcagt 53  Q
    |||||| |||| ||||||||||||||||||||||||||    
T  42418869 gacacgtataaaaatttgaaaaaatgacataattcagt 42418906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 139
Target Start/End: Complemental strand, 42511359 - 42511318
Alignment:
Q  98 gggacacatctaatccgaggagtgtccgtacttcatagcttt 139  Q
    |||||||  |||||||||||||||||||| ||||||||||||    
T  42511359 gggacacggctaatccgaggagtgtccgtgcttcatagcttt 42511318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 81
Target Start/End: Complemental strand, 6698513 - 6698453
Alignment:
Q  22 gataataatttgaaaaaa-tgacataattcagtgtaaacatagatgtcgtgtcggtgtcga 81  Q
    |||||||||||||||||| ||| |||||||||||||| ||||  |||||| | ||||||||    
T  6698513 gataataatttgaaaaaagtgaaataattcagtgtaatcatacgtgtcgtattggtgtcga 6698453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 51
Target Start/End: Original strand, 24894492 - 24894520
Alignment:
Q  23 ataataatttgaaaaaatgacataattca 51  Q
    |||||||||||||||||||||||||||||    
T  24894492 ataataatttgaaaaaatgacataattca 24894520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 136
Target Start/End: Original strand, 44635546 - 44635613
Alignment:
Q  69 gtgtcggtgtcgatgtcggacaccgacacgg-gacacatctaatccgaggagtgtccgtacttcatagc 136  Q
    |||||||||||| |||||||||| ||||| | |||||  |||||| ||||||||||||| |||||||||    
T  44635546 gtgtcggtgtcggtgtcggacac-gacaccgagacacgcctaatctgaggagtgtccgtgcttcatagc 44635613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 9e-21; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 34446565 - 34446628
Alignment:
Q  16 gacacggataataatttgaaaaaatgacataattcagtgtaaacatagatgtcgtgtcggtgtc 79  Q
    ||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||    
T  34446565 gacacggataataatttgagaaaatgacataattcagtgtaatcataggtgtcgtgtcggtgtc 34446628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 24 - 136
Target Start/End: Complemental strand, 30781345 - 30781232
Alignment:
Q  24 taataatttgaaaaaatgacataattcagtgtaaacatagatgtcgtgtcggtgtcgatgtcggacaccgaca-cgggacacatctaatccgaggagtgt 122  Q
    ||||||||||| |||||||||||||| | ||||| ||||| |||| |||||||||| || || ||||| |||| |||||||||  |||||||||||||||    
T  30781345 taataatttgagaaaatgacataattaattgtaatcataggtgtcatgtcggtgtcaatatcagacactgacaccgggacacacttaatccgaggagtgt 30781246  T
Q  123 ccgtacttcatagc 136  Q
     ||| |||||||||    
T  30781245 tcgtgcttcatagc 30781232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 15 - 115
Target Start/End: Original strand, 34229453 - 34229548
Alignment:
Q  15 cgacacggataataatttgaaaaaatgacataattcagtgtaaacatagatgtcgtgtcggtgtcgatgtcggacaccgacacgggacacatctaatccg 114  Q
    ||||| |||||||||||||||||||||||| || |||||||||  ||||||| ||||| ||||||| ||||||||||     ||||||||||||||||||    
T  34229453 cgacatggataataatttgaaaaaatgacacaagtcagtgtaataatagatgccgtgttggtgtcggtgtcggacac-----cgggacacatctaatccg 34229547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 12235585 - 12235521
Alignment:
Q  9 cggacacgacacggataataatttgaaaaaatgacataattcagtgtaaacatagatgtcgtgtc 73  Q
    |||||| |||||||||||||||| || |||||||||||||||||||||| ||||| |||||||||    
T  12235585 cggacatgacacggataataattagagaaaatgacataattcagtgtaatcataggtgtcgtgtc 12235521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 15 - 78
Target Start/End: Original strand, 6389742 - 6389805
Alignment:
Q  15 cgacacggataataatttgaaaaaatgacataattcagtgtaaacatagatgtcgtgtcggtgt 78  Q
    |||||||||||||||||||| ||||||| |||||| ||||||| ||||| ||||||||||||||    
T  6389742 cgacacggataataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcggtgt 6389805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 12086405 - 12086345
Alignment:
Q  15 cgacacggataataatttgaaaaaatgacataattcagtgtaaacatagatgtcgtgtcgg 75  Q
    |||||||||||||||||||| | |||||||||||||||| ||| ||||| |||||||||||    
T  12086405 cgacacggataataatttgagataatgacataattcagtttaatcataggtgtcgtgtcgg 12086345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 57
Target Start/End: Original strand, 28715295 - 28715336
Alignment:
Q  16 gacacggataataatttgaaaaaatgacataattcagtgtaa 57  Q
    ||||||| ||||||||||||||||||||||||||||||||||    
T  28715295 gacacggctaataatttgaaaaaatgacataattcagtgtaa 28715336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 19602239 - 19602171
Alignment:
Q  17 acacggataataatttgaaaaaatgacataattcagtgtaaacatagatgtcgtgtcggtgtcgatgtc 85  Q
    |||| ||||||||||||| ||||||| |||||||||||||| ||||| | | ||||||||||| |||||    
T  19602239 acactgataataatttgagaaaatgatataattcagtgtaatcataggtattgtgtcggtgtccatgtc 19602171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 80
Target Start/End: Complemental strand, 17168521 - 17168458
Alignment:
Q  17 acacggataataatttgaaaaaatgacataattcagtgtaaacatagatgtcgtgtcggtgtcg 80  Q
    |||| ||||||||||||| ||||||| |||||| |||||||  |||| ||||||||||||||||    
T  17168521 acactgataataatttgagaaaatgatataatttagtgtaataataggtgtcgtgtcggtgtcg 17168458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 25010270 - 25010225
Alignment:
Q  7 accggacacgacacggataataatttgaaaaaatgacataattcag 52  Q
    |||||||||||||| | ||||||||||||||||| |||||||||||    
T  25010270 accggacacgacacagctaataatttgaaaaaatcacataattcag 25010225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 22 - 57
Target Start/End: Original strand, 17168900 - 17168935
Alignment:
Q  22 gataataatttgaaaaaatgacataattcagtgtaa 57  Q
    |||||||||||||||||||||||||||||| |||||    
T  17168900 gataataatttgaaaaaatgacataattcaatgtaa 17168935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 5970168 - 5970126
Alignment:
Q  15 cgacacggataataatttgaaaaaatgacataattcagtgtaa 57  Q
    |||||| | ||||||||||||||||| ||||||||||||||||    
T  5970168 cgacacagttaataatttgaaaaaatcacataattcagtgtaa 5970126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 7977890 - 7977848
Alignment:
Q  15 cgacacggataataatttgaaaaaatgacataattcagtgtaa 57  Q
    |||||| | ||||||||||||||||| ||||||||||||||||    
T  7977890 cgacacagctaataatttgaaaaaattacataattcagtgtaa 7977848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 12696323 - 12696365
Alignment:
Q  15 cgacacggataataatttgaaaaaatgacataattcagtgtaa 57  Q
    |||||| | ||||||||||||||||| ||||||||||||||||    
T  12696323 cgacacagctaataatttgaaaaaattacataattcagtgtaa 12696365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 16766696 - 16766738
Alignment:
Q  15 cgacacggataataatttgaaaaaatgacataattcagtgtaa 57  Q
    |||||| | ||||||||||||||||| ||||||||||||||||    
T  16766696 cgacacagctaataatttgaaaaaatcacataattcagtgtaa 16766738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 135
Target Start/End: Original strand, 34595215 - 34595253
Alignment:
Q  97 cgggacacatctaatccgaggagtgtccgtacttcatag 135  Q
    ||||||||| |||||||||||||||||||| ||||||||    
T  34595215 cgggacacacctaatccgaggagtgtccgtgcttcatag 34595253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 57
Target Start/End: Complemental strand, 10770725 - 10770692
Alignment:
Q  24 taataatttgaaaaaatgacataattcagtgtaa 57  Q
    ||||||||||||||||| ||||||||||||||||    
T  10770725 taataatttgaaaaaatcacataattcagtgtaa 10770692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 26247429 - 26247490
Alignment:
Q  19 acggataataatttgaaaaaatgacataattcagtgtaaacatagatgtcgtgtcggtgtcg 80  Q
    |||||||||||||| | ||||||||||| || ||| ||| ||||| | ||||||||||||||    
T  26247429 acggataataatttaagaaaatgacatattttagtataatcataggtttcgtgtcggtgtcg 26247490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 57
Target Start/End: Original strand, 31384928 - 31384961
Alignment:
Q  24 taataatttgaaaaaatgacataattcagtgtaa 57  Q
    ||||||||||||||||| ||||||||||||||||    
T  31384928 taataatttgaaaaaatcacataattcagtgtaa 31384961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 134
Target Start/End: Original strand, 31959231 - 31959268
Alignment:
Q  97 cgggacacatctaatccgaggagtgtccgtacttcata 134  Q
    ||||||||| |||||||||||||||||||| |||||||    
T  31959231 cgggacacacctaatccgaggagtgtccgtgcttcata 31959268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 57
Target Start/End: Original strand, 34595142 - 34595175
Alignment:
Q  24 taataatttgaaaaaatgacataattcagtgtaa 57  Q
    ||||||||||||||||| ||||||||||||||||    
T  34595142 taataatttgaaaaaatcacataattcagtgtaa 34595175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 91 - 135
Target Start/End: Original strand, 4878017 - 4878061
Alignment:
Q  91 ccgacacgggacacatctaatccgaggagtgtccgtacttcatag 135  Q
    ||||||| ||||||  |||||||||||||||||||| ||||||||    
T  4878017 ccgacacaggacacgcctaatccgaggagtgtccgtgcttcatag 4878061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 6299511 - 6299567
Alignment:
Q  15 cgacacggataataatttgaaaaaatgacataattcagtgtaaacatagatgtcgtg 71  Q
    ||||| |||||||||||||| ||||||| |||||||| |||||  |||| |||||||    
T  6299511 cgacatggataataatttgagaaaatgatataattcaatgtaatgataggtgtcgtg 6299567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 6306321 - 6306377
Alignment:
Q  15 cgacacggataataatttgaaaaaatgacataattcagtgtaaacatagatgtcgtg 71  Q
    ||||| |||||||||||||| ||||||| |||||||| |||||  |||| |||||||    
T  6306321 cgacatggataataatttgagaaaatgatataattcaatgtaatgataggtgtcgtg 6306377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 91 - 135
Target Start/End: Original strand, 6389807 - 6389851
Alignment:
Q  91 ccgacacgggacacatctaatccgaggagtgtccgtacttcatag 135  Q
    ||||||||||||||  |||||||||| ||||||||| ||||||||    
T  6389807 ccgacacgggacactcctaatccgagaagtgtccgtgcttcatag 6389851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 7569226 - 7569186
Alignment:
Q  17 acacggataataatttgaaaaaatgacataattcagtgtaa 57  Q
    |||| ||||||||||||| ||||| ||||||||||||||||    
T  7569226 acacagataataatttgagaaaattacataattcagtgtaa 7569186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 57
Target Start/End: Complemental strand, 16388283 - 16388251
Alignment:
Q  25 aataatttgaaaaaatgacataattcagtgtaa 57  Q
    |||||||||||||||| ||||||||||||||||    
T  16388283 aataatttgaaaaaatcacataattcagtgtaa 16388251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 34541803 - 34541747
Alignment:
Q  22 gataataatttgaaaaaatgacataattcagtgtaaacatagatgtcgtgtcggtgt 78  Q
    |||||||||| |||||||||||| |||||| ||||| ||||  |||| |||||||||    
T  34541803 gataataattagaaaaaatgacaaaattcaatgtaatcatatgtgtcatgtcggtgt 34541747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 43554514 - 43554585
Alignment:
Q  9 cggacacgacacggataataatttgaaaaaatgacataattcagtgtaaacatagatgtcgtgtcggtgtcg 80  Q
    ||||||||||||| |||||||||||| ||||||| |||||| ||||||| ||||| ||||||||||||||||    
T  43554514 cggacacgacacgtataataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcggtgtcg 43554585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 15 - 93
Target Start/End: Complemental strand, 18607157 - 18607079
Alignment:
Q  15 cgacacggataataatttgaaaaaatgacataattcagtgtaaacatagatgtcgtgtcggtgtcgatgtcggacaccg 93  Q
    ||||| |||||||||||||| ||||| |||||||||| ||||| ||||| ||||||||| |||| | |||| |||||||    
T  18607157 cgacatggataataatttgagaaaataacataattcaatgtaatcataggtgtcgtgtctgtgttggtgtccgacaccg 18607079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 57
Target Start/End: Original strand, 4344742 - 4344783
Alignment:
Q  16 gacacggataataatttgaaaaaatgacataattcagtgtaa 57  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  4344742 gacaccgataataatttgaaaaaatgacataattcagtgtaa 4344783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 79
Target Start/End: Complemental strand, 5468031 - 5467974
Alignment:
Q  22 gataataatttgaaaaaatgacataattcagtgtaaacatagatgtcgtgtcggtgtc 79  Q
    ||||||||||||| ||||| ||||||||||||||||  |||| |||||||||||||||    
T  5468031 gataataatttgataaaatcacataattcagtgtaattataggtgtcgtgtcggtgtc 5467974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 24906359 - 24906319
Alignment:
Q  17 acacggataataatttgaaaaaatgacataattcagtgtaa 57  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  24906359 acacagataataatttgaaaaaatgacataattcagtgtaa 24906319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 39696059 - 39695995
Alignment:
Q  15 cgacacggataataatttgaaaaaatgacataattcagtgtaaacatagatgtcgtgtcggtgtc 79  Q
    |||||| || |||||||||| ||||||| |||||| ||||||| ||||| |||||||||||||||    
T  39696059 cgacaccgacaataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcggtgtc 39695995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 13287459 - 13287417
Alignment:
Q  15 cgacacggataataatttgaaaaaatgacataattcagtgtaa 57  Q
    |||||| ||||||||||||||||||| ||||||||||||||||    
T  13287459 cgacacagataataatttgaaaaaatcacataattcagtgtaa 13287417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 80
Target Start/End: Complemental strand, 26205805 - 26205755
Alignment:
Q  30 tttgaaaaaatgacataattcagtgtaaacatagatgtcgtgtcggtgtcg 80  Q
    ||||| |||||||||||||||||||||| ||||| |||||||| |||||||    
T  26205805 tttgagaaaatgacataattcagtgtaatcataggtgtcgtgttggtgtcg 26205755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 38749623 - 38749581
Alignment:
Q  15 cgacacggataataatttgaaaaaatgacataattcagtgtaa 57  Q
    |||||| |||||||||||||||||||||||||||||| |||||    
T  38749623 cgacaccgataataatttgaaaaaatgacataattcaatgtaa 38749581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 57
Target Start/End: Original strand, 18162055 - 18162096
Alignment:
Q  16 gacacggataataatttgaaaaaatgacataattcagtgtaa 57  Q
    ||||||||||||||||| | ||||||||||||||||||||||    
T  18162055 gacacggataataatttaagaaaatgacataattcagtgtaa 18162096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 31264446 - 31264495
Alignment:
Q  24 taataatttgaaaaaatgacataattcagtgtaaacatagatgtcgtgtc 73  Q
    ||||||||||| |||||||||||||||||||||| ||||  |||||||||    
T  31264446 taataatttgagaaaatgacataattcagtgtaatcataagtgtcgtgtc 31264495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 135
Target Start/End: Original strand, 17123122 - 17123166
Alignment:
Q  91 ccgacacgggacacatctaatccgaggagtgtccgtacttcatag 135  Q
    ||||||||||||||  |||||||||||||||||||| ||||||||    
T  17123122 ccgacacgggacacgcctaatccgaggagtgtccgtgcttcatag 17123166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 42469220 - 42469268
Alignment:
Q  15 cgacacggataataatttgaaaaaatgacataattcagtgtaaacatag 63  Q
    |||||||||||||||||||| ||||||||||| || ||||||| |||||    
T  42469220 cgacacggataataatttgagaaaatgacatattttagtgtaatcatag 42469268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 62
Target Start/End: Complemental strand, 2577240 - 2577193
Alignment:
Q  15 cgacacggataataatttgaaaaaatgacataattcagtgtaaacata 62  Q
    |||||| ||||||||||||| |||||||||||||| ||||||| ||||    
T  2577240 cgacaccgataataatttgagaaaatgacataatttagtgtaatcata 2577193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 7997224 - 7997166
Alignment:
Q  17 acacggataataatttgaaaaaatgacataattcagtgtaaacatagatgtcgtgtcgg 75  Q
    |||||||||||||||||| ||||||| ||||| ||||||||  |||  |||||||||||    
T  7997224 acacggataataatttgagaaaatgatataatacagtgtaattataagtgtcgtgtcgg 7997166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 18586344 - 18586291
Alignment:
Q  19 acggataataatttgaaaaaatgacataattcagtgtaaacatagatgtcgtgtc 73  Q
    |||||||||||||||||||| ||||||||| ||||||||  |||| |||||||||    
T  18586344 acggataataatttgaaaaa-tgacataatacagtgtaattataggtgtcgtgtc 18586291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 21191116 - 21191074
Alignment:
Q  15 cgacacggataataatttgaaaaaatgacataattcagtgtaa 57  Q
    |||||| | ||||||||||||||||| ||||||||||||||||    
T  21191116 cgacacagctaataatttgaaaaaatcacataattcagtgtaa 21191074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 43001799 - 43001841
Alignment:
Q  15 cgacacggataataatttgaaaaaatgacataattcagtgtaa 57  Q
    |||||| | ||||||||||||||||| ||||||||||||||||    
T  43001799 cgacactgctaataatttgaaaaaattacataattcagtgtaa 43001841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 57
Target Start/End: Original strand, 6247630 - 6247663
Alignment:
Q  24 taataatttgaaaaaatgacataattcagtgtaa 57  Q
    ||||||||||||||||| ||||||||||||||||    
T  6247630 taataatttgaaaaaatcacataattcagtgtaa 6247663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 6471948 - 6471907
Alignment:
Q  16 gacacggataataatttgaaaaaatgacataattcagtgtaa 57  Q
    ||||||| ||||||||||| ||||| ||||||||||||||||    
T  6471948 gacacggctaataatttgagaaaatcacataattcagtgtaa 6471907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 137
Target Start/End: Complemental strand, 17593690 - 17593661
Alignment:
Q  108 taatccgaggagtgtccgtacttcatagct 137  Q
    ||||||||||||||||||||||||||||||    
T  17593690 taatccgaggagtgtccgtacttcatagct 17593661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 18288110 - 18288053
Alignment:
Q  16 gacacggataataatttgaaaaaatgacataattcagtgtaaacatagatgtcgtgtc 73  Q
    ||||||||||||||||||| |||||||| ||| ||||| ||| ||||| |||| ||||    
T  18288110 gacacggataataatttgagaaaatgacttaactcagtataatcataggtgtcatgtc 18288053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 57
Target Start/End: Complemental strand, 21576796 - 21576763
Alignment:
Q  24 taataatttgaaaaaatgacataattcagtgtaa 57  Q
    ||||||||||||||||| ||||||||||||||||    
T  21576796 taataatttgaaaaaatcacataattcagtgtaa 21576763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 80
Target Start/End: Original strand, 25863211 - 25863268
Alignment:
Q  23 ataataatttgaaaaaatgacataattcagtgtaaacatagatgtcgtgtcggtgtcg 80  Q
    |||||||||||| ||||||| ||||||||||||||  |||  ||||||||| ||||||    
T  25863211 ataataatttgagaaaatgatataattcagtgtaattataagtgtcgtgtcagtgtcg 25863268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 28296327 - 28296368
Alignment:
Q  15 cgacacggataataatttgaaaaaatgacataattcagtgta 56  Q
    |||||| ||||||||||||| |||||||||||||||| ||||    
T  28296327 cgacaccgataataatttgagaaaatgacataattcaatgta 28296368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 57
Target Start/End: Original strand, 39698549 - 39698582
Alignment:
Q  24 taataatttgaaaaaatgacataattcagtgtaa 57  Q
    ||||||||||||||||| ||||||||||||||||    
T  39698549 taataatttgaaaaaatcacataattcagtgtaa 39698582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 134
Target Start/End: Original strand, 3966596 - 3966632
Alignment:
Q  98 gggacacatctaatccgaggagtgtccgtacttcata 134  Q
    ||||||| ||||||||||||||||||||| |||||||    
T  3966596 gggacacgtctaatccgaggagtgtccgtgcttcata 3966632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 135
Target Start/End: Original strand, 6247670 - 6247729
Alignment:
Q  75 gtgtcgatgtcggacaccgacacgggacacatctaatccgaggagtgtccgtacttcatag 135  Q
    |||||| |||||||||| | ||||||||||| |||||||||| |||||| || ||||||||    
T  6247670 gtgtcggtgtcggacacgg-cacgggacacacctaatccgagaagtgtctgtgcttcatag 6247729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 21137697 - 21137749
Alignment:
Q  24 taataatttgaaaaaatgacataattcagtgtaaacatagatgtcgtgtcggt 76  Q
    ||||||| ||| |||||||| |||||||||| || ||||| ||||||||||||    
T  21137697 taataatctgagaaaatgacgtaattcagtgaaatcataggtgtcgtgtcggt 21137749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 91
Target Start/End: Original strand, 44067515 - 44067590
Alignment:
Q  15 cgacacggataataatttgaaaaaatgacataattcagtgtaaacatagatgtcgtgtcggtgtcgatgtcggacac 91  Q
    |||||||||||||||||||| ||||||||||||| ||||||||  |||  |||||||||||||||| ||||||||||    
T  44067515 cgacacggataataatttgagaaaatgacataatacagtgtaattataagtgtcgtgtcggtgtcg-tgtcggacac 44067590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 8017492 - 8017548
Alignment:
Q  22 gataataatttgaaaaaatgacataattcagtgtaaacatagatgtcgtgtcggtgt 78  Q
    ||||||||| |||||||||||||||||| ||||||| ||||||||||||||| ||||    
T  8017492 gataataatatgaaaaaatgacataattgagtgtaatcatagatgtcgtgtcagtgt 8017548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 1676711 - 1676771
Alignment:
Q  15 cgacacggataataatttgaaaaaatgacataattcagtgtaaacatagatgtcgtgtcgg 75  Q
    |||||||||||||||||||  ||||||||||| || ||||||| ||||| |||||||||||    
T  1676711 cgacacggataataatttgtgaaaatgacatattttagtgtaatcataggtgtcgtgtcgg 1676771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 15 - 95
Target Start/End: Complemental strand, 13009553 - 13009473
Alignment:
Q  15 cgacacggataataatttgaaaaaatgacataattcagtgtaaacatagatgtcgtgtcggtgtcgatgtcggacaccgac 95  Q
    |||||||||||||||||||| ||||  | |||||| ||||||| ||||  |||||||||||||| | |||| |||||||||    
T  13009553 cgacacggataataatttgagaaaacaatataatttagtgtaatcataagtgtcgtgtcggtgtaggtgtcagacaccgac 13009473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 23 - 91
Target Start/End: Original strand, 13845241 - 13845309
Alignment:
Q  23 ataataatttgaaaaaatgacataattcagtgtaaacatagatgtcgtgtcggtgtcgatgtcggacac 91  Q
    |||||||||||| ||||||| |||||| || |||| ||||| ||||||||| |||||| ||||||||||    
T  13845241 ataataatttgagaaaatgatataatttagagtaatcataggtgtcgtgtctgtgtcggtgtcggacac 13845309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 35431196 - 35431140
Alignment:
Q  19 acggataataatttgaaaaaatgacataattcagtgtaaacatagatgtcgtgtcgg 75  Q
    |||||||||||||||| ||||||||||| || ||||||| ||||| |||||||||||    
T  35431196 acggataataatttgagaaaatgacatattttagtgtaatcataggtgtcgtgtcgg 35431140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 23 - 79
Target Start/End: Original strand, 40063958 - 40064014
Alignment:
Q  23 ataataatttgaaaaaatgacataattcagtgtaaacatagatgtcgtgtcggtgtc 79  Q
    |||||||||||| |||||||||||||||| ||||| |||||  ||||||||||||||    
T  40063958 ataataatttgagaaaatgacataattcattgtaatcataggcgtcgtgtcggtgtc 40064014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 16869773 - 16869699
Alignment:
Q  17 acacggataataatttgaaaaaatgacataattcagtgtaaacatagatgtcgtgtcggtgtcgatgtcggacac 91  Q
    ||||||| |||||||| | |||||||||||||||| | ||| ||| | |||||||| ||||||| ||||||||||    
T  16869773 acacggaaaataatttaagaaaatgacataattcactataatcattggtgtcgtgttggtgtcggtgtcggacac 16869699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 30068087 - 30068050
Alignment:
Q  16 gacacggataataatttgaaaaaatgacataattcagt 53  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  30068087 gacacggataataatttgagaaaatgacataattcagt 30068050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 79
Target Start/End: Complemental strand, 14513226 - 14513170
Alignment:
Q  23 ataataatttgaaaaaatgacataattcagtgtaaacatagatgtcgtgtcggtgtc 79  Q
    |||||||||||| ||||| ||||||||||| |||| ||||||| | |||||||||||    
T  14513226 ataataatttgagaaaattacataattcagcgtaatcatagatttggtgtcggtgtc 14513170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 137
Target Start/End: Original strand, 22652068 - 22652108
Alignment:
Q  97 cgggacacatctaatccgaggagtgtccgtacttcatagct 137  Q
    |||||||| ||||||||||||||||||||| ||||||||||    
T  22652068 cgggacacgtctaatccgaggagtgtccgtgcttcatagct 22652108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 39820436 - 39820488
Alignment:
Q  23 ataataatttgaaaaaatgacataattcagtgtaaacatagatgtcgtgtcgg 75  Q
    |||||||||||| ||||||| |||||| ||||||| ||||| |||||||||||    
T  39820436 ataataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcgg 39820488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 24 - 67
Target Start/End: Original strand, 18646180 - 18646223
Alignment:
Q  24 taataatttgaaaaaatgacataattcagtgtaaacatagatgt 67  Q
    |||||||||||||||||||||| ||||||||||| |||| ||||    
T  18646180 taataatttgaaaaaatgacatgattcagtgtaatcatatatgt 18646223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 28883935 - 28883880
Alignment:
Q  18 cacggataataatttgaaaaaatgacataattcagtgtaaacatagatgtcgtgtc 73  Q
    |||| |||||||||||| ||||||||||||||||||| || ||||| |||| ||||    
T  28883935 cacgaataataatttgagaaaatgacataattcagtggaatcataggtgtcttgtc 28883880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 135
Target Start/End: Complemental strand, 29510271 - 29510233
Alignment:
Q  97 cgggacacatctaatccgaggagtgtccgtacttcatag 135  Q
    ||||||||| |||||||||||||||||||| ||||||||    
T  29510271 cgggacacacctaatccgaggagtgtccgtgcttcatag 29510233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 137
Target Start/End: Original strand, 39820503 - 39820549
Alignment:
Q  91 ccgacacgggacacatctaatccgaggagtgtccgtacttcatagct 137  Q
    ||||||||||||||  |||||||||| ||||||||| ||||||||||    
T  39820503 ccgacacgggacacgcctaatccgagaagtgtccgtgcttcatagct 39820549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 135
Target Start/End: Original strand, 40064043 - 40064081
Alignment:
Q  97 cgggacacatctaatccgaggagtgtccgtacttcatag 135  Q
    |||||||||||||||||||||||||||||| || |||||    
T  40064043 cgggacacatctaatccgaggagtgtccgtgctacatag 40064081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 41832000 - 41831958
Alignment:
Q  15 cgacacggataataatttgaaaaaatgacataattcagtgtaa 57  Q
    |||||| | ||||||||||||||||| ||||||||||||||||    
T  41832000 cgacacagttaataatttgaaaaaatcacataattcagtgtaa 41831958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 72
Target Start/End: Original strand, 3658146 - 3658203
Alignment:
Q  15 cgacacggataataatttgaaaaaatgacataattcagtgtaaacatagatgtcgtgt 72  Q
    |||||||||||||||||||| ||||| |  || |||||||||| ||||| ||||||||    
T  3658146 cgacacggataataatttgagaaaataatgtagttcagtgtaatcataggtgtcgtgt 3658203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 57
Target Start/End: Original strand, 4948660 - 4948693
Alignment:
Q  24 taataatttgaaaaaatgacataattcagtgtaa 57  Q
    ||||||||||||||||| ||||||||||||||||    
T  4948660 taataatttgaaaaaatcacataattcagtgtaa 4948693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 132
Target Start/End: Original strand, 13203700 - 13203733
Alignment:
Q  99 ggacacatctaatccgaggagtgtccgtacttca 132  Q
    |||||||||||||||||||||||||||| |||||    
T  13203700 ggacacatctaatccgaggagtgtccgtgcttca 13203733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 57
Target Start/End: Original strand, 25566849 - 25566882
Alignment:
Q  24 taataatttgaaaaaatgacataattcagtgtaa 57  Q
    ||||||||||||||||| ||||||||||||||||    
T  25566849 taataatttgaaaaaatcacataattcagtgtaa 25566882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 80
Target Start/End: Complemental strand, 26915300 - 26915235
Alignment:
Q  15 cgacacggataataatttgaaaaaatgacataattcagtgtaaacatagatgtcgtgtcggtgtcg 80  Q
    |||||||||||| | ||||| |||||||||||||| | ||||| || |  ||||||||||||||||    
T  26915300 cgacacggataaaattttgagaaaatgacataatttaatgtaatcacaagtgtcgtgtcggtgtcg 26915235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 57
Target Start/End: Original strand, 28642408 - 28642449
Alignment:
Q  16 gacacggataataatttgaaaaaatgacataattcagtgtaa 57  Q
    ||||||| ||||||||||||||| | ||||||||||||||||    
T  28642408 gacacggttaataatttgaaaaatttacataattcagtgtaa 28642449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 95
Target Start/End: Original strand, 3911117 - 3911189
Alignment:
Q  23 ataataatttgaaaaaatgacataattcagtgtaaacatagatgtcgtgtcggtgtcgatgtcggacaccgac 95  Q
    ||||| |||| | ||||| ||||||||||||| || ||||  |||||||| ||||||| | ||||||||||||    
T  3911117 ataatcatttaataaaatcacataattcagtgaaatcataagtgtcgtgttggtgtcggtatcggacaccgac 3911189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 56
Target Start/End: Complemental strand, 6211488 - 6211456
Alignment:
Q  24 taataatttgaaaaaatgacataattcagtgta 56  Q
    |||||||||||||||||||||||||||| ||||    
T  6211488 taataatttgaaaaaatgacataattcaatgta 6211456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 137
Target Start/End: Complemental strand, 24413537 - 24413497
Alignment:
Q  97 cgggacacatctaatccgaggagtgtccgtacttcatagct 137  Q
    |||||||| ||||||||||| ||||||||| ||||||||||    
T  24413537 cgggacacgtctaatccgagaagtgtccgtgcttcatagct 24413497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 42005006 - 42004942
Alignment:
Q  16 gacacggataataatttgaaaaaatgacataattcagtgtaaacatagatgtcgtgtcggtgtcg 80  Q
    ||||||||||||||||||| |||||||||||||| ||||||| ||||| ||| ||||||||||||    
T  42005006 gacacggataataatttgagaaaatgacataatttagtgtaatcataggtgttgtgtcggtgtcg 42004942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 21145466 - 21145528
Alignment:
Q  16 gacacggataataatttgaaaa-aatgacataattcagtgtaaacatagatgtcgtgtcggtg 77  Q
    |||||||||||||||||||||| |||||||||||||||||||| |||||  ||||||||||||    
T  21145466 gacacggataataatttgaaaaaaatgacataattcagtgtaatcataggcgtcgtgtcggtg 21145528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 22794136 - 22794080
Alignment:
Q  17 acacggataataatttgaaaaaatgacataattcagtgtaaacatagatgtcgtgtc 73  Q
    |||||||||||||||||||||||||||||||| ||||||||  |||| |||||||||    
T  22794136 acacggataataatttgaaaaaatgacataatacagtgtaattataggtgtcgtgtc 22794080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 80
Target Start/End: Complemental strand, 6936458 - 6936395
Alignment:
Q  17 acacggataataatttgaaaaaatgacataattcagtgtaaacatagatgtcgtgtcggtgtcg 80  Q
    |||||||||||||| ||| |||||||||||||| ||||||| ||||| ||||||||| ||||||    
T  6936458 acacggataataatctgagaaaatgacataattaagtgtaatcataggtgtcgtgtctgtgtcg 6936395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 80
Target Start/End: Complemental strand, 40747833 - 40747768
Alignment:
Q  15 cgacacggataataatttgaaaaaatgacataattcagtgtaaacatagatgtcgtgtcggtgtcg 80  Q
    |||||||||||||||||||| |||||||||||||||| |||||  |||| |||| ||| |||||||    
T  40747833 cgacacggataataatttgagaaaatgacataattcaatgtaattataggtgtcatgttggtgtcg 40747768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 48415786 - 48415728
Alignment:
Q  15 cgacacggataataatttgaaaaaa-tgacataattcagtgtaaacatagatgtcgtgt 72  Q
    |||||||||||||||||| |||||| ||| |||||| ||||||| ||||||||||||||    
T  48415786 cgacacggataataattttaaaaaaatgatataatttagtgtaatcatagatgtcgtgt 48415728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 75 - 135
Target Start/End: Complemental strand, 22881627 - 22881567
Alignment:
Q  75 gtgtcgatgtcggacaccgacac-gggacacatctaatccgaggagtgtccgtacttcatag 135  Q
    |||||| |||||||||| ||||| ||||||| ||||||||||||||||||||| ||||||||    
T  22881627 gtgtcggtgtcggacac-gacaccgggacacgtctaatccgaggagtgtccgtgcttcatag 22881567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 42325561 - 42325601
Alignment:
Q  17 acacggataataatttgaaaaaatgacataattcagtgtaa 57  Q
    |||| ||||||||||||| ||||||||||||||||||||||    
T  42325561 acaccgataataatttgagaaaatgacataattcagtgtaa 42325601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 137
Target Start/End: Complemental strand, 48450592 - 48450548
Alignment:
Q  93 gacacgggacacatctaatccgaggagtgtccgtacttcatagct 137  Q
    ||||| |||||| ||||||||||||||||||||| ||||||||||    
T  48450592 gacacaggacacgtctaatccgaggagtgtccgtgcttcatagct 48450548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 113298 - 113340
Alignment:
Q  15 cgacacggataataatttgaaaaaatgacataattcagtgtaa 57  Q
    |||||| | ||||||||||||||||| ||||||||||||||||    
T  113298 cgacacagctaataatttgaaaaaatcacataattcagtgtaa 113340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 398825 - 398783
Alignment:
Q  15 cgacacggataataatttgaaaaaatgacataattcagtgtaa 57  Q
    |||||| | ||||||||||||||||| ||||||||||||||||    
T  398825 cgacaccgctaataatttgaaaaaatcacataattcagtgtaa 398783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 135
Target Start/End: Original strand, 9828136 - 9828174
Alignment:
Q  97 cgggacacatctaatccgaggagtgtccgtacttcatag 135  Q
    |||||||| ||||||||||||||||||||| ||||||||    
T  9828136 cgggacacgtctaatccgaggagtgtccgtgcttcatag 9828174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 17754310 - 17754352
Alignment:
Q  15 cgacacggataataatttgaaaaaatgacataattcagtgtaa 57  Q
    |||||| | ||||||||||||||||| ||||||||||||||||    
T  17754310 cgacaccgctaataatttgaaaaaattacataattcagtgtaa 17754352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 62
Target Start/End: Complemental strand, 30847771 - 30847733
Alignment:
Q  24 taataatttgaaaaaatgacataattcagtgtaaacata 62  Q
    |||||||||||||||||||||||||||| ||||| ||||    
T  30847771 taataatttgaaaaaatgacataattcaatgtaatcata 30847733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 57
Target Start/End: Complemental strand, 1486760 - 1486727
Alignment:
Q  24 taataatttgaaaaaatgacataattcagtgtaa 57  Q
    ||||||||||||||||| ||||||||||||||||    
T  1486760 taataatttgaaaaaatcacataattcagtgtaa 1486727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 57
Target Start/End: Complemental strand, 6612222 - 6612189
Alignment:
Q  24 taataatttgaaaaaatgacataattcagtgtaa 57  Q
    ||||||||||||||||| ||||||||||||||||    
T  6612222 taataatttgaaaaaattacataattcagtgtaa 6612189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 57
Target Start/End: Complemental strand, 18190159 - 18190126
Alignment:
Q  24 taataatttgaaaaaatgacataattcagtgtaa 57  Q
    ||||||||||||||||| ||||||||||||||||    
T  18190159 taataatttgaaaaaattacataattcagtgtaa 18190126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 57
Target Start/End: Complemental strand, 24577237 - 24577204
Alignment:
Q  24 taataatttgaaaaaatgacataattcagtgtaa 57  Q
    ||||||||||||||||| ||||||||||||||||    
T  24577237 taataatttgaaaaaatcacataattcagtgtaa 24577204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 57
Target Start/End: Complemental strand, 40258984 - 40258951
Alignment:
Q  24 taataatttgaaaaaatgacataattcagtgtaa 57  Q
    ||||||||||||||||| ||||||||||||||||    
T  40258984 taataatttgaaaaaatcacataattcagtgtaa 40258951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 135
Target Start/End: Complemental strand, 7918190 - 7918154
Alignment:
Q  99 ggacacatctaatccgaggagtgtccgtacttcatag 135  Q
    ||||||| |||||||||||||||||||| ||||||||    
T  7918190 ggacacacctaatccgaggagtgtccgtgcttcatag 7918154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 11571590 - 11571626
Alignment:
Q  21 ggataataatttgaaaaaatgacataattcagtgtaa 57  Q
    |||||||||||||| |||||||||||||||| |||||    
T  11571590 ggataataatttgagaaaatgacataattcaatgtaa 11571626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 57
Target Start/End: Original strand, 18337338 - 18337370
Alignment:
Q  25 aataatttgaaaaaatgacataattcagtgtaa 57  Q
    |||||||||||||||| ||||||||||||||||    
T  18337338 aataatttgaaaaaatcacataattcagtgtaa 18337370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 91 - 135
Target Start/End: Original strand, 34741921 - 34741965
Alignment:
Q  91 ccgacacgggacacatctaatccgaggagtgtccgtacttcatag 135  Q
    ||||||||||||||  ||||||||| |||||||||| ||||||||    
T  34741921 ccgacacgggacacgcctaatccgaagagtgtccgtgcttcatag 34741965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 1948 - 2008
Alignment:
Q  15 cgacacggataataatttgaaaaaatgacataattcagtgtaaacatagatgtcgtgtcgg 75  Q
    |||||||||||||||||||  ||||||||||| || ||||||| ||||| |||||||||||    
T  1948 cgacacggataataatttgtgaaaatgacatattttagtgtaatcataggtgtcgtgtcgg 2008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 33423 - 33360
Alignment:
Q  15 cgacacggataataatttgaaaaaatgacataattcagtgtaaacatagatgtcgtgtcggtgtc 79  Q
    |||||| | ||||||||||||||||| ||||||||||||||||  | | ||||||||||||||||    
T  33423 cgacacagctaataatttgaaaaaataacataattcagtgtaattaca-atgtcgtgtcggtgtc 33360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 91
Target Start/End: Complemental strand, 225328 - 225253
Alignment:
Q  15 cgacacggataataatttgaaaaaatgacataattcagtgtaaacatagatgtcgtgtcggtgtcgatgtcggacac 91  Q
    |||||| ||||||||||||| ||||||||||||| || |||||  |||  |||||||| ||||||| ||||||||||    
T  225328 cgacacagataataatttgagaaaatgacataatacaatgtaattataagtgtcgtgttggtgtcg-tgtcggacac 225253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 97 - 136
Target Start/End: Original strand, 13505 - 13544
Alignment:
Q  97 cgggacacatctaatccgaggagtgtccgtacttcatagc 136  Q
    ||||| ||| ||||||||||||||||||||||||||||||    
T  13505 cgggatacacctaatccgaggagtgtccgtacttcatagc 13544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1528 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1528
Description:

Target: scaffold1528; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 1034 - 1076
Alignment:
Q  15 cgacacggataataatttgaaaaaatgacataattcagtgtaa 57  Q
    |||||| | ||||||||||||||||| ||||||||||||||||    
T  1034 cgacaccgctaataatttgaaaaaattacataattcagtgtaa 1076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 20171 - 20213
Alignment:
Q  15 cgacacggataataatttgaaaaaatgacataattcagtgtaa 57  Q
    |||||| | ||||||||||||||||| ||||||||||||||||    
T  20171 cgacacagctaataatttgaaaaaatcacataattcagtgtaa 20213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 3909 - 3867
Alignment:
Q  15 cgacacggataataatttgaaaaaatgacataattcagtgtaa 57  Q
    |||||||| ||||||||| ||||||| ||||||||||||||||    
T  3909 cgacacggttaataatttaaaaaaatcacataattcagtgtaa 3867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 51810 - 51852
Alignment:
Q  15 cgacacggataataatttgaaaaaatgacataattcagtgtaa 57  Q
    |||||| | ||||||||||||||||| ||||||||||||||||    
T  51810 cgacacagctaataatttgaaaaaatcacataattcagtgtaa 51852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 70277 - 70319
Alignment:
Q  15 cgacacggataataatttgaaaaaatgacataattcagtgtaa 57  Q
    |||||| | ||||||||||||||||| ||||||||||||||||    
T  70277 cgacacagttaataatttgaaaaaataacataattcagtgtaa 70319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 46681 - 46723
Alignment:
Q  15 cgacacggataataatttgaaaaaatgacataattcagtgtaa 57  Q
    |||||| | ||||||||||||||||| ||||||||||||||||    
T  46681 cgacacagttaataatttgaaaaaatcacataattcagtgtaa 46723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 134
Target Start/End: Complemental strand, 440 - 403
Alignment:
Q  97 cgggacacatctaatccgaggagtgtccgtacttcata 134  Q
    ||||||||| |||||||||||||||||||| |||||||    
T  440 cgggacacacctaatccgaggagtgtccgtgcttcata 403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 57
Target Start/End: Original strand, 14538 - 14571
Alignment:
Q  24 taataatttgaaaaaatgacataattcagtgtaa 57  Q
    ||||||||||||||||| ||||||||||||||||    
T  14538 taataatttgaaaaaatcacataattcagtgtaa 14571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University