View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3363_low_2 (Length: 580)
Name: NF3363_low_2
Description: NF3363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3363_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 520; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 1 - 557
Target Start/End: Complemental strand, 26494771 - 26494215
Alignment:
| Q |
1 |
ataaaattcacagtcccatttttaggcaccaagtaaccattcaaaacaatatcctccgtcactacacgtggaattgtgtagtgagttggaggatgacgcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
26494771 |
ataaaattcacagtcccatttttaggcaccaagtaaccattcaaaacaatatcctccgtcactacacgtggaattgtgtagtgagtaggaggatgacgcc |
26494672 |
T |
|
| Q |
101 |
ttaacccttccaaaatcacagccttcaaatatggcaatttctacaaatcttcctctctcacttccctttcttctctttcaccaaccacctcttcaatttc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
26494671 |
ttaacccttccaaaatcacagccttcaaatatggcaatttctccaaatcttcctctctcacttccctttcctctctttcaccaaccacctcttcaatttc |
26494572 |
T |
|
| Q |
201 |
ctccactagcatctgttgcacgtgtttgtctttcaccaaattcgccataacccactctagtgtagttgaagttgtgtcagttcctgcggtgagaaactcg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26494571 |
ctccactagcatctgttgcacgtgtttgtctttcaccaaattcgccataacccactctagtgtagttgaagttgtgtcagttcctgcggtgagaaactcg |
26494472 |
T |
|
| Q |
301 |
gaacatagtgcaacaacttcaccttcgttaagcttccgtttctcctcaggtaaccgcaaattcaacaaagtatccacataacaaataacatattcatcat |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
26494471 |
gaacatagtgcaacaacttcaccttcgttaagcttccgtttctcctcaggtaaccgcaaattcaacaaagtatccacataacaaacaacatattcatcat |
26494372 |
T |
|
| Q |
401 |
catcgttannnnnnncaataactttctttctggcttgtattagttcaaccaacaaatcattttgcaacttccgaagttgcgtaaattcttgccaacgttt |
500 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26494371 |
catcgttatttttttcaataactttctttctggcttgtattagttcaaccaacaaatcattttgcaacttccgaagttgcgtaaattcttgccaacgttt |
26494272 |
T |
|
| Q |
501 |
tctaaacaacacgcgagatacaattttcgggaagaaatttagagcacccaactgtcc |
557 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26494271 |
tctaaacaacacgcgagatacaattttcgggaagaaatttagagcacccaactgtcc |
26494215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 1 - 386
Target Start/End: Complemental strand, 26506816 - 26506431
Alignment:
| Q |
1 |
ataaaattcacagtcccatttttaggcaccaagtaaccattcaaaacaatatcctccgtcactacacgtggaattgtgtagtgagttggaggatgacgcc |
100 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||| || |||| | |||||| |||||| || |||||||| |||||||| ||||| || |||| |
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| T |
26506816 |
ataaaattaactgtcccatttttaggcaccaagtaaccgttaaaaatcacatcctcggtcactgcatgtggaattaagtagtgagaaggagggtggcgcc |
26506717 |
T |
|
| Q |
101 |
ttaacccttccaaaatcacagccttcaaatatggcaatttctacaaatcttcctctctcacttccctttcttctctttcaccaaccacctcttcaatttc |
200 |
Q |
| |
|
|||||||||| |||||||| ||||| | ||| || || || | ||||||||||||| | ||||| ||||| ||||| ||||||| || || ||||||| |
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|
| T |
26506716 |
ttaacccttctaaaatcactgccttaagataaggtaacttttccaaatcttcctcttttacttctctttcctctctatcaccaattacaactccaatttc |
26506617 |
T |
|
| Q |
201 |
ctccactagcatctgttgcacgtgtttgtctttcaccaaattcgccataacccactctagtgtagttgaagttgtgtcagttcctgcggtgagaaactcg |
300 |
Q |
| |
|
||| |||| | |||||||| ||||||| ||| ||||||||||||||||||||||||| || |||||||||||| || ||||| || ||||||||||| |
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| T |
26506616 |
ctcgactattctttgttgcacatgtttgtatttgaccaaattcgccataacccactctaatgcagttgaagttgtatctgttccggcagtgagaaactcc |
26506517 |
T |
|
| Q |
301 |
gaacatagtgcaacaacttcaccttcgttaagcttccgtttctcctcaggtaaccgcaaattcaacaaagtatccacataacaaat |
386 |
Q |
| |
|
||||| || ||||||| ||| | || | |||||| |||||||||||||| ||| |||||||||||||||||| || |||||||| |
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|
| T |
26506516 |
gaacacagcgcaacaagctcatcgtcatcaagctttcgtttctcctcaggcaactccaaattcaacaaagtatcgacgtaacaaat |
26506431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 4 - 47
Target Start/End: Complemental strand, 2327177 - 2327134
Alignment:
| Q |
4 |
aaattcacagtcccatttttaggcaccaagtaaccattcaaaac |
47 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
2327177 |
aaattcaccgtcccatttttaggcaccaaataaccattcaaaac |
2327134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 2330895 - 2330840
Alignment:
| Q |
1 |
ataaaattcacagtcccatttttaggcaccaagtaaccattcaaaacaatatcctc |
56 |
Q |
| |
|
||||||||||| ||||||| |||||||||||| |||||||||||||| | |||||| |
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|
| T |
2330895 |
ataaaattcaccgtcccatctttaggcaccaaataaccattcaaaaccacatcctc |
2330840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 4 - 56
Target Start/End: Complemental strand, 2303622 - 2303570
Alignment:
| Q |
4 |
aaattcacagtcccatttttaggcaccaagtaaccattcaaaacaatatcctc |
56 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||| |||||||| | |||||| |
|
|
| T |
2303622 |
aaattcaccgtcccatttttaggcaccaaataaccgttcaaaaccacatcctc |
2303570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 4 - 56
Target Start/End: Complemental strand, 2321324 - 2321272
Alignment:
| Q |
4 |
aaattcacagtcccatttttaggcaccaagtaaccattcaaaacaatatcctc |
56 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||| |||||||| | |||||| |
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|
| T |
2321324 |
aaattcaccgtcccatttttaggcaccaaataaccgttcaaaaccacatcctc |
2321272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 165
Target Start/End: Complemental strand, 2293922 - 2293848
Alignment:
| Q |
91 |
ggatgacgccttaacccttccaaaatcacagccttcaaatatggcaatttctacaaatcttcctctctcacttcc |
165 |
Q |
| |
|
||||||||||| ||||||||||||| |||| ||||||||| | | ||||| ||| ||||||||| |||||||| |
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|
| T |
2293922 |
ggatgacgcctcaacccttccaaaaccacacacttcaaataccgaagtttctgcaagtcttcctctttcacttcc |
2293848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 91 - 158
Target Start/End: Original strand, 15176593 - 15176660
Alignment:
| Q |
91 |
ggatgacgccttaacccttccaaaatcacagccttcaaatatggcaatttctacaaatcttcctctct |
158 |
Q |
| |
|
||||||||||||| |||||||||||| ||||| || | |||||||| ||| | ||||||||| ||||| |
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|
| T |
15176593 |
ggatgacgccttagcccttccaaaattacagctttaagatatggcatttttttcaaatcttcttctct |
15176660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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