View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3363_low_22 (Length: 289)

Name: NF3363_low_22
Description: NF3363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3363_low_22
NF3363_low_22
[»] chr2 (5 HSPs)
chr2 (14-254)||(39822951-39823191)
chr2 (73-168)||(39914852-39914947)
chr2 (71-168)||(39907877-39907972)
chr2 (170-250)||(18058765-18058845)
chr2 (177-250)||(25628873-25628946)
[»] chr8 (6 HSPs)
chr8 (171-250)||(29525928-29526007)
chr8 (173-250)||(9305291-9305368)
chr8 (174-250)||(30233862-30233937)
chr8 (172-248)||(41775003-41775080)
chr8 (174-250)||(35162986-35163062)
chr8 (209-250)||(36675674-36675715)
[»] chr1 (5 HSPs)
chr1 (175-250)||(43824194-43824269)
chr1 (174-250)||(47459173-47459249)
chr1 (177-250)||(19563357-19563430)
chr1 (175-238)||(37028555-37028618)
chr1 (177-250)||(36384378-36384450)
[»] chr5 (5 HSPs)
chr5 (174-250)||(38089036-38089112)
chr5 (171-250)||(43146405-43146484)
chr5 (172-250)||(29668576-29668653)
chr5 (171-250)||(2134811-2134890)
chr5 (174-250)||(20256896-20256971)
[»] chr3 (4 HSPs)
chr3 (172-250)||(35637278-35637356)
chr3 (174-250)||(2663223-2663298)
chr3 (191-250)||(49323236-49323295)
chr3 (174-232)||(28212599-28212657)
[»] chr7 (2 HSPs)
chr7 (172-250)||(48065060-48065137)
chr7 (172-250)||(24879140-24879218)
[»] chr4 (2 HSPs)
chr4 (209-250)||(50470036-50470077)
chr4 (174-250)||(31799336-31799412)
[»] chr6 (1 HSPs)
chr6 (174-242)||(21508437-21508505)


Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 14 - 254
Target Start/End: Complemental strand, 39823191 - 39822951
Alignment:
Q  14 cacagatgaagaggagatgtatgcatcccacgcctgtacctgcagtgtcaccagttacgacggagacattgtgcatgatggaaacagttacgatatagag 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  39823191 cacagatgaagaggagatgtatgcatcccacgcctgtacctgcagtgtcaccagttacgacggagacattgtgcgtgatggaaacagttacgatatagag 39823092  T
Q  114 agagggtttgggtaaagaggagaattgaatcttttgtgcgggtggatttaaataatgaaagagatattattgcatcaactctcacggaacatatcattct 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||  |||| ||||||||    
T  39823091 agagggtttgggtaaagaggagaattgaatcttttgtgcgggtggatttaaataaagaaagagatattattgcatcaactctcacccaacacatcattct 39822992  T
Q  214 tacatccaaccaataaaaatatgacacatgttattaaattt 254  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  39822991 tacacccaaccaataaaaatatgacacatgttattaaattt 39822951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 73 - 168
Target Start/End: Complemental strand, 39914947 - 39914852
Alignment:
Q  73 acggagacattgtgcatgatggaaacagttacgatatagagagagggtttgggtaaagaggagaattgaatcttttgtgcgggtggatttaaataa 168  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||||||||||| || ||||||||||||| ||||||| ||||||||||||||||    
T  39914947 acggagacattgtgcctgatggaaacagttacgatatggagagagggtttgggtgaaaaggagaattgaattttttgtgtgggtggatttaaataa 39914852  T

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Target: chr2; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 71 - 168
Target Start/End: Complemental strand, 39907972 - 39907877
Alignment:
Q  71 cgacggagacattgtgcatgatggaaacagttacgatatagagagagggtttgggtaaagaggagaattgaatcttttgtgcgggtggatttaaataa 168  Q
    |||||||||||||||||||||||||||||||||||||| ||||||  ||||||||| ||||||||||||||||||||| ||| |||||||||||||||    
T  39907972 cgacggagacattgtgcatgatggaaacagttacgatacagagag--ggtttgggtgaagaggagaattgaatcttttctgctggtggatttaaataa 39907877  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 170 - 250
Target Start/End: Original strand, 18058765 - 18058845
Alignment:
Q  170 gaaagagatattattgcatcaactctcacggaacatatcattcttacatccaaccaataaaaatatgacacatgttattaa 250  Q
    |||||||||||| |||||| |||||||||  |||| || |||||||||    || ||||||||||||||||||||||||||    
T  18058765 gaaagagatattcttgcatgaactctcacccaacacattattcttacacttgactaataaaaatatgacacatgttattaa 18058845  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 250
Target Start/End: Original strand, 25628873 - 25628946
Alignment:
Q  177 atattattgcatcaactctcacggaacatatcattcttacatccaaccaataaaaatatgacacatgttattaa 250  Q
    ||||| |||||| |||||||||  |||| || ||| ||||| ||||||||||||||||||| |||| |||||||    
T  25628873 atattcttgcatgaactctcacccaacacattatttttacacccaaccaataaaaatatgatacatattattaa 25628946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 7e-21; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 171 - 250
Target Start/End: Complemental strand, 29526007 - 29525928
Alignment:
Q  171 aaagagatattattgcatcaactctcacggaacatatcattcttacatccaaccaataaaaatatgacacatgttattaa 250  Q
    ||||||||||| |||||| |||||||||  |||| || ||||||||| ||||||||||||||||||||||||||||||||    
T  29526007 aaagagatattcttgcatgaactctcaccaaacacattattcttacacccaaccaataaaaatatgacacatgttattaa 29525928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 173 - 250
Target Start/End: Complemental strand, 9305368 - 9305291
Alignment:
Q  173 agagatattattgcatcaactctcacggaacatatcattcttacatccaaccaataaaaatatgacacatgttattaa 250  Q
    ||||||||||||||||  ||||||||  |||| || |||||||||  |||||||||||||||||||||||||||||||    
T  9305368 agagatattattgcatggactctcacccaacacattattcttacactcaaccaataaaaatatgacacatgttattaa 9305291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 174 - 250
Target Start/End: Complemental strand, 30233937 - 30233862
Alignment:
Q  174 gagatattattgcatcaactctcacggaacatatcattcttacatccaaccaataaaaatatgacacatgttattaa 250  Q
    |||||||| |||||| |||||||||  |||| |||||||||||| |||||||||||||| |||||||||||||||||    
T  30233937 gagatattcttgcatgaactctcacctaacacatcattcttacacccaaccaataaaaa-atgacacatgttattaa 30233862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 248
Target Start/End: Complemental strand, 41775080 - 41775003
Alignment:
Q  172 aagagatattattgcatcaactctcacggaacatatcattcttacatccaaccaat-aaaaatatgacacatgttatt 248  Q
    |||||||||| |||||| |||||||||  |||| |||||| ||||||||||| ||| ||||| |||||||||||||||    
T  41775080 aagagatattcttgcatgaactctcacccaacacatcatttttacatccaacaaataaaaaaaatgacacatgttatt 41775003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 174 - 250
Target Start/End: Original strand, 35162986 - 35163062
Alignment:
Q  174 gagatattattgcatcaactctcacggaacatatcattcttacatccaaccaataaaaatatgacacatgttattaa 250  Q
    |||||||| |||||| |||||||    |||| || ||||||||| || |||||||||||||||||||||||||||||    
T  35162986 gagatattcttgcatgaactctcttccaacacattattcttacacccgaccaataaaaatatgacacatgttattaa 35163062  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 209 - 250
Target Start/End: Original strand, 36675674 - 36675715
Alignment:
Q  209 attcttacatccaaccaataaaaatatgacacatgttattaa 250  Q
    ||||||||| |||||||||||||||||||||||| |||||||    
T  36675674 attcttacacccaaccaataaaaatatgacacatattattaa 36675715  T

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Target: chr1 (Bit Score: 52; Significance: 7e-21; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 175 - 250
Target Start/End: Original strand, 43824194 - 43824269
Alignment:
Q  175 agatattattgcatcaactctcacggaacatatcattcttacatccaaccaataaaaatatgacacatgttattaa 250  Q
    ||||||| ||||||||||||||||  |||| |||||||||||| |||||||||||||| |||||||||||||||||    
T  43824194 agatattcttgcatcaactctcactcaacacatcattcttacacccaaccaataaaaaaatgacacatgttattaa 43824269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 174 - 250
Target Start/End: Complemental strand, 47459249 - 47459173
Alignment:
Q  174 gagatattattgcatcaactctcacggaacatatcattcttacatccaaccaataaaaatatgacacatgttattaa 250  Q
    |||||||| || |||||| ||||||  |||| || |||||||||||||||||||||||| |||||||||||||||||    
T  47459249 gagatattcttacatcaattctcacctaacacattattcttacatccaaccaataaaaaaatgacacatgttattaa 47459173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 177 - 250
Target Start/End: Original strand, 19563357 - 19563430
Alignment:
Q  177 atattattgcatcaactctcacggaacatatcattcttacatccaaccaataaaaatatgacacatgttattaa 250  Q
    ||||| |||||| |||||||||  || | |||||||||||| |||||||||||||||||||||||| |||||||    
T  19563357 atattcttgcataaactctcacccaagacatcattcttacacccaaccaataaaaatatgacacatattattaa 19563430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 175 - 238
Target Start/End: Original strand, 37028555 - 37028618
Alignment:
Q  175 agatattattgcatcaactctcacggaacatatcattcttacatccaaccaataaaaatatgac 238  Q
    ||||||| |||||||||||||||| ||| | |||||||||||| |||||||||||||| |||||    
T  37028555 agatattcttgcatcaactctcaccgaatacatcattcttacacccaaccaataaaaaaatgac 37028618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 250
Target Start/End: Complemental strand, 36384450 - 36384378
Alignment:
Q  177 atattattgcatcaactctcacggaacatatcattcttacatccaaccaataaaaatatgacacatgttattaa 250  Q
    ||||| ||| || |||||||||  |||| |||||||||||| |||||||||||||| || ||| ||||||||||    
T  36384450 atatttttgtatgaactctcacccaacacatcattcttacacccaaccaataaaaa-ataacatatgttattaa 36384378  T

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Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 174 - 250
Target Start/End: Complemental strand, 38089112 - 38089036
Alignment:
Q  174 gagatattattgcatcaactctcacggaacatatcattcttacatccaaccaataaaaatatgacacatgttattaa 250  Q
    |||||||| |||||||||||||||   |||| || ||||||||| ||||||||||||||||||||||||||||||||    
T  38089112 gagatattcttgcatcaactctcatccaacacattattcttacacccaaccaataaaaatatgacacatgttattaa 38089036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 171 - 250
Target Start/End: Complemental strand, 43146484 - 43146405
Alignment:
Q  171 aaagagatattattgcatcaactctcacggaacatatcattcttacatccaaccaataaaaatatgacacatgttattaa 250  Q
    ||||||||||| || ||| |||||||||  |||| || ||||||||| ||||||||||||||||||||||||||||||||    
T  43146484 aaagagatattcttacatgaactctcacccaacacattattcttacacccaaccaataaaaatatgacacatgttattaa 43146405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 172 - 250
Target Start/End: Complemental strand, 29668653 - 29668576
Alignment:
Q  172 aagagatattattgcatcaactctcacggaacatatcattcttacatccaaccaataaaaatatgacacatgttattaa 250  Q
    |||||||||| |||||| |||||||||  |||| || ||||||||||||||||||||||||||||||||||||| ||||    
T  29668653 aagagatattcttgcatgaactctcacc-aacacattattcttacatccaaccaataaaaatatgacacatgttgttaa 29668576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 250
Target Start/End: Complemental strand, 2134890 - 2134811
Alignment:
Q  171 aaagagatattattgcatcaactctcacggaacatatcattcttacatccaaccaataaaaatatgacacatgttattaa 250  Q
    ||||||||||| |||||| ||||||||   |||| |||||| ||||| | |||||||||||| |||||||||||| ||||    
T  2134890 aaagagatattcttgcatgaactctcagccaacacatcattgttacaccaaaccaataaaaaaatgacacatgttcttaa 2134811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 250
Target Start/End: Original strand, 20256896 - 20256971
Alignment:
Q  174 gagatattattgcatcaactctcacggaacatatcattcttacatccaaccaataaaaatatgacacatgttattaa 250  Q
    |||||||| |||||| ||||||||   |||| ||  |||||||| ||||| ||||||||||||||||||||||||||    
T  20256896 gagatattcttgcataaactctcatccaacacatttttcttacacccaac-aataaaaatatgacacatgttattaa 20256971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 7e-18; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 172 - 250
Target Start/End: Complemental strand, 35637356 - 35637278
Alignment:
Q  172 aagagatattattgcatcaactctcacggaacatatcattcttacatccaaccaataaaaatatgacacatgttattaa 250  Q
    ||||||| || |||||| |||||||||  |||| || ||||||||| ||||||||||||||||||||||||||||||||    
T  35637356 aagagattttcttgcatgaactctcacccaacacattattcttacacccaaccaataaaaatatgacacatgttattaa 35637278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 250
Target Start/End: Original strand, 2663223 - 2663298
Alignment:
Q  174 gagatattattgcatcaactctcacggaacatatcattcttacatccaaccaataaaaatatgacacatgttattaa 250  Q
    |||||||| ||| || |||||||||  |||| |||||||||||| | |||||||||||| |||||| ||||||||||    
T  2663223 gagatattcttgtatgaactctcactcaacacatcattcttacaccaaaccaataaaaa-atgacatatgttattaa 2663298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 250
Target Start/End: Complemental strand, 49323295 - 49323236
Alignment:
Q  191 actctcacggaacatatcattcttacatccaaccaataaaaatatgacacatgttattaa 250  Q
    ||||||||  |||| |||||||||||| | |||||||||||| |||||||||||| ||||    
T  49323295 actctcactcaacacatcattcttacacctaaccaataaaaagatgacacatgttgttaa 49323236  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 232
Target Start/End: Original strand, 28212599 - 28212657
Alignment:
Q  174 gagatattattgcatcaactctcacggaacatatcattcttacatccaaccaataaaaa 232  Q
    |||||||| |||||| ||||||||   |||| |||||||||||| ||||||||||||||    
T  28212599 gagatattcttgcataaactctcatccaacacatcattcttacacccaaccaataaaaa 28212657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 172 - 250
Target Start/End: Complemental strand, 48065137 - 48065060
Alignment:
Q  172 aagagatattattgcatcaactctcacggaacatatcattcttacatccaaccaataaaaatatgacacatgttattaa 250  Q
    |||||||||| |||||| ||||||||   |||| || ||||||||| ||||||||||||||||||||||||||||||||    
T  48065137 aagagatatttttgcatgaactctcatc-aacacattattcttacacccaaccaataaaaatatgacacatgttattaa 48065060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 172 - 250
Target Start/End: Complemental strand, 24879218 - 24879140
Alignment:
Q  172 aagagatattattgcatcaactctcacggaacatatcattcttacatccaaccaataaaaatatgacacatgttattaa 250  Q
    |||||||||| |||||| |||||||||  |||| || ||||||||| || | |||||||||||||||| ||||||||||    
T  24879218 aagagatattcttgcatgaactctcacccaacacattattcttacacccgatcaataaaaatatgacatatgttattaa 24879140  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 209 - 250
Target Start/End: Original strand, 50470036 - 50470077
Alignment:
Q  209 attcttacatccaaccaataaaaatatgacacatgttattaa 250  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  50470036 attcttacatccaaccaataaaaatatgacacatgttattaa 50470077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 250
Target Start/End: Complemental strand, 31799412 - 31799336
Alignment:
Q  174 gagatattattgcatcaactctcacggaacatatcattcttacatccaaccaataaaaatatgacacatgttattaa 250  Q
    ||||| || |||||| |||||||||  |||| |||||||||| |  ||| ||||||||| |||||||||||||||||    
T  31799412 gagattttcttgcatgaactctcaccaaacacatcattcttatactcaatcaataaaaaaatgacacatgttattaa 31799336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 242
Target Start/End: Original strand, 21508437 - 21508505
Alignment:
Q  174 gagatattattgcatcaactctcacggaacatatcattcttacatccaaccaataaaaatatgacacat 242  Q
    ||||| || |||||| |||||| ||  ||||||| |||||||||  |||||||||||||||||||||||    
T  21508437 gagatgttcttgcatgaactcttacccaacatattattcttacacgcaaccaataaaaatatgacacat 21508505  T

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