View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3363_low_23 (Length: 281)

Name: NF3363_low_23
Description: NF3363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3363_low_23
NF3363_low_23
[»] chr4 (5 HSPs)
chr4 (24-171)||(23047932-23048079)
chr4 (81-171)||(23043634-23043724)
chr4 (176-239)||(23048163-23048226)
chr4 (176-239)||(8564794-8564857)
chr4 (176-239)||(23043808-23043871)
[»] chr7 (4 HSPs)
chr7 (19-104)||(3073338-3073423)
chr7 (176-241)||(3076262-3076327)
chr7 (176-239)||(29471009-29471072)
chr7 (176-241)||(3072749-3072814)
[»] chr2 (1 HSPs)
chr2 (84-171)||(15790860-15790948)
[»] chr8 (1 HSPs)
chr8 (176-239)||(15241488-15241551)
[»] chr5 (1 HSPs)
chr5 (176-239)||(15114193-15114256)


Alignment Details
Target: chr4 (Bit Score: 116; Significance: 5e-59; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 24 - 171
Target Start/End: Original strand, 23047932 - 23048079
Alignment:
Q  24 cccttcggggctttatttggcgatgagcacttgtcgaattcgaaccaaggtggagattgttagattatgtggctctaattctctacttttacaagccatt 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||    
T  23047932 cccttcggggctttatttggcgatgagcacttgtcgaattcgaaccaaggtggagattgttagattatgtggttctaattctccacttttacaagtcatt 23048031  T
Q  124 aaatcagttacttatgagatcggttactcttggatttaatgtgcctac 171  Q
     ||||| ||||||||||| |  ||||||||||||||||||||||||||    
T  23048032 gaatcaattacttatgaggtaagttactcttggatttaatgtgcctac 23048079  T

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Target: chr4; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 81 - 171
Target Start/End: Original strand, 23043634 - 23043724
Alignment:
Q  81 tgttagattatgtggctctaattctctacttttacaagccattaaatcagttacttatgagatcggttactcttggatttaatgtgcctac 171  Q
    ||||||||||||||| |||||||||| ||||||||||| |||| ||||| ||||||||||| |  ||||||||||||||||||||||||||    
T  23043634 tgttagattatgtggttctaattctccacttttacaagtcattgaatcaattacttatgaggtaagttactcttggatttaatgtgcctac 23043724  T

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Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 176 - 239
Target Start/End: Original strand, 23048163 - 23048226
Alignment:
Q  176 ttacttctcttaaattctcaattgcatcgatattgtgcttccgcattgcgctgataccttaaca 239  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  23048163 ttacttctctttaattctcaattgcatcgatcttgtgcttccgcattgcgctgataccttaaca 23048226  T

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Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 176 - 239
Target Start/End: Complemental strand, 8564857 - 8564794
Alignment:
Q  176 ttacttctcttaaattctcaattgcatcgatattgtgcttccgcattgcgctgataccttaaca 239  Q
    ||||||||||| |||||||||| |||||||| |||||||||||||||||| |||||||||||||    
T  8564857 ttacttctctttaattctcaatagcatcgatcttgtgcttccgcattgcgttgataccttaaca 8564794  T

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Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 176 - 239
Target Start/End: Original strand, 23043808 - 23043871
Alignment:
Q  176 ttacttctcttaaattctcaattgcatcgatattgtgcttccgcattgcgctgataccttaaca 239  Q
    ||||||||||| |||||||||||||||||||  ||||||||||||||||||| |||||||||||    
T  23043808 ttacttctctttaattctcaattgcatcgatcctgtgcttccgcattgcgctaataccttaaca 23043871  T

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Target: chr7 (Bit Score: 62; Significance: 8e-27; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 3073423 - 3073338
Alignment:
Q  19 aagtacccttcggggctttatttggcgatgagcacttgtcgaattcgaaccaaggtggagattgttagattatgtggctctaattc 104  Q
    |||| |||||||||||||||||||||||||||||||||  ||||||||| |||||||||||||||| |||||||||||||| ||||    
T  3073423 aagtgcccttcggggctttatttggcgatgagcacttgatgaattcgaaacaaggtggagattgttggattatgtggctctcattc 3073338  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 176 - 241
Target Start/End: Complemental strand, 3076327 - 3076262
Alignment:
Q  176 ttacttctcttaaattctcaattgcatcgatattgtgcttccgcattgcgctgataccttaacact 241  Q
    ||||||||||| ||||||||||| ||| |||  |||||||||||||||||||||||||||||||||    
T  3076327 ttacttctctttaattctcaatttcattgatcctgtgcttccgcattgcgctgataccttaacact 3076262  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 176 - 239
Target Start/End: Original strand, 29471009 - 29471072
Alignment:
Q  176 ttacttctcttaaattctcaattgcatcgatattgtgcttccgcattgcgctgataccttaaca 239  Q
    ||||||||||| ||||||||||| |||||||  |||||||||||||||| ||||||||||||||    
T  29471009 ttacttctctttaattctcaatttcatcgatcatgtgcttccgcattgcactgataccttaaca 29471072  T

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Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 176 - 241
Target Start/End: Complemental strand, 3072814 - 3072749
Alignment:
Q  176 ttacttctcttaaattctcaattgcatcgatattgtgcttccgcattgcgctgataccttaacact 241  Q
    ||||||||||| ||||||||||| ||| |||  ||||||||||||||| |||||||||||||||||    
T  3072814 ttacttctctttaattctcaatttcatagatcctgtgcttccgcattgtgctgataccttaacact 3072749  T

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Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 84 - 171
Target Start/End: Complemental strand, 15790948 - 15790860
Alignment:
Q  84 tagattatgtggctctaattctct-acttttacaagccattaaatcagttacttatgagatcggttactcttggatttaatgtgcctac 171  Q
    |||||||||||||||||||||||  |||||||||| ||||| ||| |||| |||||||| | |||||||||||||||||||||||||||    
T  15790948 tagattatgtggctctaattctcccacttttacaatccattgaattagttgcttatgaggtaggttactcttggatttaatgtgcctac 15790860  T

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Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 176 - 239
Target Start/End: Complemental strand, 15241551 - 15241488
Alignment:
Q  176 ttacttctcttaaattctcaattgcatcgatattgtgcttccgcattgcgctgataccttaaca 239  Q
    |||||||||||  ||||||||||||||||||  |||||||| ||||||||||||||||||||||    
T  15241551 ttacttctctttgattctcaattgcatcgatcctgtgcttctgcattgcgctgataccttaaca 15241488  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 176 - 239
Target Start/End: Original strand, 15114193 - 15114256
Alignment:
Q  176 ttacttctcttaaattctcaattgcatcgatattgtgcttccgcattgcgctgataccttaaca 239  Q
    ||||||||||| |||||||||| ||||||||  |||| ||| ||||||||||||||||||||||    
T  15114193 ttacttctctttaattctcaatagcatcgatcatgtgtttctgcattgcgctgataccttaaca 15114256  T

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