View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3363_low_27 (Length: 266)
Name: NF3363_low_27
Description: NF3363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3363_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 131; Significance: 5e-68; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 935991 - 936216
Alignment:
| Q |
1 |
attttgttttctagagacatacacatactgtcgccacccattaagacttattcttcattttcttgcaaagcccgccatagacttaccacctttgacctta |
100 |
Q |
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| T |
935991 |
attttgttttctagagacatacacatattgtcgccacccattaagacttattcttcattttcttgcaaagcccgccatagacttaccacctttgacctta |
936090 |
T |
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| Q |
101 |
aaaa--ctctttctcttcaacacgttttttgttgttcttgttcttaaatccttcttcaatatcatttaca-------------accttaaacttgttaat |
185 |
Q |
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|||| ||||||||||||||||||||||||||| | || ||||||| |||||||||||| ||||| ||| ||||||||||||||||| |
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| T |
936091 |
aaaactctctttctcttcaacacgttttttgttct--ttcttcttaactccttcttcaatgtcattaacaaccccttatttacaccttaaacttgttaat |
936188 |
T |
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| Q |
186 |
aataatcattccaaaaatttctacaaaac |
214 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
936189 |
-ataatcattccaaaaatttctacaaaac |
936216 |
T |
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