View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3363_low_28 (Length: 256)
Name: NF3363_low_28
Description: NF3363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3363_low_28 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 16 - 256
Target Start/End: Complemental strand, 23430807 - 23430567
Alignment:
| Q |
16 |
cattaactagtataactattataatataactggaaggaatgtaagacgagatggcatgagaaattttctcagcagcatctacaacatcttgtccttgatt |
115 |
Q |
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| T |
23430807 |
cattaactagtataactattataatataactggaaggaatgtaagacgagatggcatgagaaattttctcagcggcatctacaacatcttgtccttgatt |
23430708 |
T |
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| Q |
116 |
tgcgatatttccaacatcttttgcagtttcaccaatcctatctgcaccttcactaacaacattgaagaccccttgcatgcttctacgagtggaaggcaat |
215 |
Q |
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| T |
23430707 |
cgcgatatttccaacatcttttgcagtttcaccaatcctatctgcaccttcactaacaacattgaagaccccttgcatgcttctacgagtggaaggcaat |
23430608 |
T |
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| Q |
216 |
gtcaggtgaacatgggttggagaataagtggtgggaagatt |
256 |
Q |
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| T |
23430607 |
gtcaggtgaacatgggttggagagtaagtggtgggaagatt |
23430567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 24 - 107
Target Start/End: Complemental strand, 23438872 - 23438789
Alignment:
| Q |
24 |
agtataactattataatataactggaaggaatgtaagacgagatggcatgagaaattttctcagcagcatctacaacatcttgt |
107 |
Q |
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| T |
23438872 |
agtataactgttataatataactggaaggaatgtaaaaagaggtggcatgggaaactttcccagcaacatctacgacatcttgt |
23438789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 194 - 254
Target Start/End: Complemental strand, 23438687 - 23438627
Alignment:
| Q |
194 |
gcttctacgagtggaaggcaatgtcaggtgaacatgggttggagaataagtggtgggaaga |
254 |
Q |
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| T |
23438687 |
gcttctacgagtggaaggcaatgtcaggtgaagatgggtagaagagtaagtcgtgggaaga |
23438627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 254
Target Start/End: Complemental strand, 23445431 - 23445362
Alignment:
| Q |
185 |
cccttgcatgcttctacgagtggaaggcaatgtcaggtgaacatgggttggagaataagtggtgggaaga |
254 |
Q |
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| T |
23445431 |
ccctagcatgcgtctaccggtggaaggcaatgtcatgtgaatatgggtaggagagtaagtggcgggaaga |
23445362 |
T |
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