View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3363_low_3 (Length: 558)
Name: NF3363_low_3
Description: NF3363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3363_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 18 - 538
Target Start/End: Complemental strand, 8840555 - 8840021
Alignment:
| Q |
18 |
gtcaatatctttcaaagagcttccttgattatctttgttttatccttcacaattcttgttagtgcaattgcactaggtgagtaatgcttatatatgttat |
117 |
Q |
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| T |
8840555 |
gtcaatatctttcaaagagcttccttgattatctttgttttatccttcacaattcttgttagtgcaattgcactaggtaagtaatgcttatatatgttat |
8840456 |
T |
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| Q |
118 |
aatgagtcaaattgccatgcttgttttaactatatcaa-----------------atattttaaattgtgtatgtcaaatattcttgacattgcgaaaaa |
200 |
Q |
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| T |
8840455 |
aatgagtcaaattgtcatgtttgatttaactatatcaagagaatgttatggtcaaatattttaaattgtgcatgtcaaatattcttgacatcgcgaaaaa |
8840356 |
T |
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| Q |
201 |
ttgcaatgtggttgcggacgcctccaaaacttgtatagaatttgtttctagacacatgcatgcaattgatgtgactaaaattgtggttgcgatgtgattg |
300 |
Q |
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| T |
8840355 |
ttgcaatgtggttgcggacgcctccaaaacatgtatagaatttgtttctagacacatgcatgctattgatatgactaaaattgtggttgcaatgtgattg |
8840256 |
T |
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| Q |
301 |
cagagacctctaaaaacgtcataataatcgcattgcagagaaaaatatgacgattgctaattaatttttacattttaagctttcatttccctatgcatat |
400 |
Q |
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| T |
8840255 |
cagagacctctaaaaacgtcataataatcgcattgcggagaaaaatatgacgattgctaattagtttttacattttaagctttcatttcactatgcatat |
8840156 |
T |
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| Q |
401 |
ttctctatgaaatctacttgcttacaacatggctttcatgacttgtatggttgtctataggtggagtaggaatatcacgtatgattcagaggattcagag |
500 |
Q |
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| T |
8840155 |
ttctctatgaaatctacttgcttacaacatggctttc---acttgtatggttgtctataggtggagtaggaatatcacgcatgattcagaggattcagaa |
8840059 |
T |
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| Q |
501 |
gaatgaatacatgggatttgaggagttttgttactagt |
538 |
Q |
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| T |
8840058 |
taatgaatacatgggatttgaggagttttgctactagt |
8840021 |
T |
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