View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3363_low_39 (Length: 238)

Name: NF3363_low_39
Description: NF3363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3363_low_39
NF3363_low_39
[»] chr2 (2 HSPs)
chr2 (3-223)||(42715104-42715315)
chr2 (10-223)||(3380140-3380360)
[»] scaffold0016 (1 HSPs)
scaffold0016 (10-223)||(51816-52036)
[»] scaffold0642 (1 HSPs)
scaffold0642 (10-223)||(5920-6140)
[»] scaffold0345 (1 HSPs)
scaffold0345 (10-223)||(15832-16052)
[»] scaffold0105 (1 HSPs)
scaffold0105 (10-223)||(22929-23149)
[»] chr8 (3 HSPs)
chr8 (10-223)||(44497407-44497627)
chr8 (10-105)||(24469632-24469727)
chr8 (129-209)||(24469731-24469811)
[»] chr5 (1 HSPs)
chr5 (10-211)||(36930809-36931009)
[»] scaffold0224 (1 HSPs)
scaffold0224 (160-223)||(23143-23206)
[»] chr1 (1 HSPs)
chr1 (160-223)||(42836062-42836125)


Alignment Details
Target: chr2 (Bit Score: 169; Significance: 9e-91; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 3 - 223
Target Start/End: Original strand, 42715104 - 42715315
Alignment:
Q  3 acttcaatagaagaaagttatgtaactgaaatagaataattaactcaaaaaattaatgtaaaatcaattcaagttttctacatttgacaccttttgcaca 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||    
T  42715104 acttcaatagaagaaagttatgtaactgaaatagaataattaactcataaaattaatgtaaaaccaattcaagttttctacatttgacaccttttgtaca 42715203  T
Q  103 aaatggtaaaaccaaattggaaagtgacaacatgagaagcatgaaaaatataatttgatcacatattcttccaataataaaggtgatgaactgacatctt 202  Q
    ||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |    
T  42715204 aaatggtaaaaccaaattggaaagtgacaa---------catgaaaaatataatttgatcacatattcttccaataataaaggtgatggactgacatcat 42715294  T
Q  203 tttcaaatctctctctaaagt 223  Q
    |||||||||||||||||||||    
T  42715295 tttcaaatctctctctaaagt 42715315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 10 - 223
Target Start/End: Complemental strand, 3380360 - 3380140
Alignment:
Q  10 tagaagaaagttatgtaactgaaatagaataattaactcaaaaaatta-atgtaaaatcaattcaagt------tttctacatttgacaccttttgcaca 102  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||    |||||||| |||| ||| |      ||||||||||||||||||| ||||||    
T  3380360 tagaagaaagttatgtagctgaaatagaataattaactcagaaaacactatgtaaaaccaatccaaatccaaattttctacatttgacaccttctgcaca 3380261  T
Q  103 aaatggtaaaaccaaattggaaagtgacaacatgagaagcatgaaaaatataatttgatcacatattcttccaataataaaggtgatgaactgacatctt 202  Q
    |||||||||||| |||||||||||||||||||| | | ||||| |||||||||||   | ||||||  |||||||| ||||| |||||||||||||||||    
T  3380260 aaatggtaaaacaaaattggaaagtgacaacataaaaggcatggaaaatataattcattgacatataattccaatactaaagatgatgaactgacatctt 3380161  T
Q  203 tttcaaatctctctctaaagt 223  Q
    || |||||||||||| |||||    
T  3380160 ttccaaatctctctccaaagt 3380140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 10 - 223
Target Start/End: Original strand, 51816 - 52036
Alignment:
Q  10 tagaagaaagttatgtaactgaaatagaataattaactcaaaaaatta-atgtaaaatcaattcaagt------tttctacatttgacaccttttgcaca 102  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||    |||||||| |||| ||| |      ||||||||||||||||||| ||||||    
T  51816 tagaagaaagttatgtagctgaaatagaataattaactcagaaaacactatgtaaaaccaatccaaatccaaattttctacatttgacaccttctgcaca 51915  T
Q  103 aaatggtaaaaccaaattggaaagtgacaacatgagaagcatgaaaaatataatttgatcacatattcttccaataataaaggtgatgaactgacatctt 202  Q
    |||||||||||| |||||||||||||||||||| | | ||||| |||||||||||   | ||||||| |||||||| ||||| |||||||||||||||||    
T  51916 aaatggtaaaacaaaattggaaagtgacaacataaaaggcatggaaaatataattcattgacatattattccaatactaaagatgatgaactgacatctt 52015  T
Q  203 tttcaaatctctctctaaagt 223  Q
    || |||||||||||| |||||    
T  52016 ttccaaatctctctccaaagt 52036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0642 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: scaffold0642
Description:

Target: scaffold0642; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 10 - 223
Target Start/End: Complemental strand, 6140 - 5920
Alignment:
Q  10 tagaagaaagttatgtaactgaaatagaataattaactcaaaaaatta-atgtaaaatcaattcaagt------tttctacatttgacaccttttgcaca 102  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||    |||||||| |||| ||| |      ||||||||||||||||||| ||||||    
T  6140 tagaagaaagttatgtagctgaaatagaataattaactcagaaaacactatgtaaaaccaatccaaatccaaattttctacatttgacaccttctgcaca 6041  T
Q  103 aaatggtaaaaccaaattggaaagtgacaacatgagaagcatgaaaaatataatttgatcacatattcttccaataataaaggtgatgaactgacatctt 202  Q
    |||||||||||  |||||||||||||||||||| | | ||||| |||||||||||   | ||||||| |||||||| ||||| |||||||||||||||||    
T  6040 aaatggtaaaaaaaaattggaaagtgacaacataaaaggcatggaaaatataattcattgacatattattccaatactaaagatgatgaactgacatctt 5941  T
Q  203 tttcaaatctctctctaaagt 223  Q
    || |||||||||||| |||||    
T  5940 ttccaaatctctctccaaagt 5920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0345 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 10 - 223
Target Start/End: Complemental strand, 16052 - 15832
Alignment:
Q  10 tagaagaaagttatgtaactgaaatagaataattaactcaaaaaatta-atgtaaaatcaattcaagt------tttctacatttgacaccttttgcaca 102  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||    |||||||| |||| ||| |      ||||||||||||||||||| ||||||    
T  16052 tagaagaaagttatgtagctgaaatagaataattaactcagaaaacactatgtaaaaccaatccaaatccaaattttctacatttgacaccttctgcaca 15953  T
Q  103 aaatggtaaaaccaaattggaaagtgacaacatgagaagcatgaaaaatataatttgatcacatattcttccaataataaaggtgatgaactgacatctt 202  Q
    |||||||||||  |||||||||||||||||||| | | ||||| |||||||||||   | ||||||| |||||||| ||||| |||||||||||||||||    
T  15952 aaatggtaaaaaaaaattggaaagtgacaacataaaaggcatggaaaatataattcattgacatattattccaatactaaagatgatgaactgacatctt 15853  T
Q  203 tttcaaatctctctctaaagt 223  Q
    || |||||||||||| |||||    
T  15852 ttccaaatctctctccaaagt 15832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 10 - 223
Target Start/End: Original strand, 22929 - 23149
Alignment:
Q  10 tagaagaaagttatgtaactgaaatagaataattaactcaaaaaatta-atgtaaaatcaattcaagt------tttctacatttgacaccttttgcaca 102  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||    |||||||| |||| ||| |      ||||||||||||||||||| ||||||    
T  22929 tagaagaaagttatgtagctgaaatagaataattaactcagaaaacactatgtaaaaccaatccaaatccaaattttctacatttgacaccttctgcaca 23028  T
Q  103 aaatggtaaaaccaaattggaaagtgacaacatgagaagcatgaaaaatataatttgatcacatattcttccaataataaaggtgatgaactgacatctt 202  Q
    |||||||||||  |||||||||||||||||||| | | ||||| |||||||||||   | ||||||| |||||||| ||||| |||||||||||||||||    
T  23029 aaatggtaaaaaaaaattggaaagtgacaacataaaaggcatggaaaatataattcattgacatattattccaatactaaagatgatgaactgacatctt 23128  T
Q  203 tttcaaatctctctctaaagt 223  Q
    || |||||||||||| |||||    
T  23129 ttccaaatctctctccaaagt 23149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 94; Significance: 5e-46; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 10 - 223
Target Start/End: Complemental strand, 44497627 - 44497407
Alignment:
Q  10 tagaagaaagttatgtaactgaaatagaataattaactcaaaaaatta-atgtaaaatcaattcaagt------tttctacatttgacaccttttgcaca 102  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||    |||||||| |||| ||| |      ||||||||||||||||||| ||||||    
T  44497627 tagaagaaagttatgtagctgaaatagaataattaactcagaaaacactatgtaaaaccaatccaaatccaaattttctacatttgacaccttctgcaca 44497528  T
Q  103 aaatggtaaaaccaaattggaaagtgacaacatgagaagcatgaaaaatataatttgatcacatattcttccaataataaaggtgatgaactgacatctt 202  Q
    |||||||||||| |||||||||||||||| ||| | | ||||| |||||||||||   | ||||||| |||||||| ||||| |||||||||||||||||    
T  44497527 aaatggtaaaacaaaattggaaagtgacagcataaaaggcatggaaaatataattcattgacatattattccaatactaaagatgatgaactgacatctt 44497428  T
Q  203 tttcaaatctctctctaaagt 223  Q
    || |||||||||||| |||||    
T  44497427 ttccaaatctctctccaaagt 44497407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 10 - 105
Target Start/End: Original strand, 24469632 - 24469727
Alignment:
Q  10 tagaagaaagttatgtaactgaaatagaataattaactcaaaaaattaatgtaaaatcaattcaagttttctacatttgacaccttttgcacaaaa 105  Q
    ||||||||| ||||||| ||||||||||||||||| |||| ||||   |||||||| |||| | ||||||| |||| ||||| |||||||||||||    
T  24469632 tagaagaaacttatgtagctgaaatagaataattagctcagaaaagctatgtaaaaccaatcctagttttccacatctgacaacttttgcacaaaa 24469727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 209
Target Start/End: Original strand, 24469731 - 24469811
Alignment:
Q  129 acaacatgagaagcatgaaaaatataatttgatcacatattcttccaataataaaggtgatgaactgacatctttttcaaa 209  Q
    ||||||||| | ||||| | |||||||||   | |||||||||||||| | ||||||||||  ||||||||||||| ||||    
T  24469731 acaacatgaaaggcatggataatataattcattgacatattcttccaacactaaaggtgatagactgacatcttttacaaa 24469811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 10 - 211
Target Start/End: Original strand, 36930809 - 36931009
Alignment:
Q  10 tagaagaaagttatgtaactgaaatagaataattaactca-aaaaattaatgtaaaatcaattcaagttttctacatttgacac-cttttgcacaaaatg 107  Q
    |||||||||||||||||  ||||||| ||||||||||||| |||||   |||||||| |||  ||| |||||||||||||||||  ||||||||||||||    
T  36930809 tagaagaaagttatgtagatgaaatataataattaactcagaaaaaactatgtaaaaccaa-ccaaattttctacatttgacacttttttgcacaaaatg 36930907  T
Q  108 gtaaaaccaaattggaaagtgacaacatgagaagcatgaaaaatataatttgatcacatattcttccaataataaaggtgatgaactgacatctttttca 207  Q
    ||||||   | ||||||||||| | ||||| | ||||| |||||||||||   | |||||||||||||||| |||| ||||||||||||||| |||||||    
T  36930908 gtaaaaaatatttggaaagtgatagcatgaaaggcatg-aaaatataattcattgacatattcttccaatactaaa-gtgatgaactgacatgtttttca 36931005  T
Q  208 aatc 211  Q
    ||||    
T  36931006 aatc 36931009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0224 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0224
Description:

Target: scaffold0224; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 160 - 223
Target Start/End: Original strand, 23143 - 23206
Alignment:
Q  160 atcacatattcttccaataataaaggtgatgaactgacatctttttcaaatctctctctaaagt 223  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  23143 atcacatattcttcgaataataaaggtgatcaactgacatctttttcaaatctctctctaaagt 23206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 160 - 223
Target Start/End: Original strand, 42836062 - 42836125
Alignment:
Q  160 atcacatattcttccaataataaaggtgatgaactgacatctttttcaaatctctctctaaagt 223  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  42836062 atcacatattcttcgaataataaaggtgatcaactgacatctttttcaaatctctctctaaagt 42836125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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