View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3363_low_6 (Length: 485)
Name: NF3363_low_6
Description: NF3363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3363_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 427; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 1 - 468
Target Start/End: Original strand, 45938353 - 45938820
Alignment:
| Q |
1 |
tttacttgaagcaggggttttaccttacaatggttttgcttttgatcacttgtatgggactaaggttggagggacaatttttgataaggaaggttataga |
100 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
45938353 |
tttacctgaagcaggggttttaccttacaatggttttgcttttgatcacttgtatgggactaaggttggtgggacaatttttgataaggaaggttataga |
45938452 |
T |
|
| Q |
101 |
cacactgcagctgatttgttagagtatgctgatccaaagaaaatttcggtttatttgcatgcgacagttcaaaagatactattcaagtataataaaagta |
200 |
Q |
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| T |
45938453 |
cacactgcagctgatttgttagagtatgctgatccaaagaaaatttcggtttatttgcatgcgacagttcaaaagatactattcaagtataataaaagta |
45938552 |
T |
|
| Q |
201 |
tgtatttaagaatgcctcatattaactttttatatctgccctaaattgtctttataaaatatacttgtaagatgatgaagtcttaactctctttattcaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45938553 |
tgtatttaagaatgcctcatattaactttttatatctaccctaaattgtctttataaaatatacttgtaagatgatgaagtcttaactctctttattcaa |
45938652 |
T |
|
| Q |
301 |
tgtgttattagagtttttctcgatactcgacaactttacttgaatgcatcaagttgatatgtatcttaggccccattacttgatcatattannnnnnnga |
400 |
Q |
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| T |
45938653 |
tgtgttactagagtttttctcgatactcgacaactttacttgaatgcataaagttgatatgtatcttaggccccattacttgatcatattatttttttga |
45938752 |
T |
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| Q |
401 |
atttgttttacagaaaaagggaggccacaagcatatggagtgatattcaaagatacattgggaatcat |
468 |
Q |
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| T |
45938753 |
atttgttttacagaaaaagggaggccacaagcatatggagtgatattcaaagatacattgggaatcat |
45938820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 45945117 - 45945304
Alignment:
| Q |
1 |
tttacttgaagcaggggttttaccttacaatggttttgcttttgatcacttgtatgggactaaggttggagggacaatttttgataaggaaggttataga |
100 |
Q |
| |
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|||||||||||||||| |||| |||||||| |||||| | |||||||| | ||||||||||||||||||||||||||||| |||||||||||| ||| | |
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| T |
45945117 |
tttacttgaagcagggattttgccttacaacggttttacatttgatcatgtatatgggactaaggttggagggacaattttcgataaggaaggtcataaa |
45945216 |
T |
|
| Q |
101 |
cacactgcagctgatttgttagagtatgctgatccaaagaaaatttcggtttatttgcatgcgacagttcaaaagatactattcaagt |
188 |
Q |
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| T |
45945217 |
cacactgcagctgatttgttagagtatgccgatccaaagagaatttctgtttatttgcatgccacagttcaaaagatactattcaagt |
45945304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 409 - 468
Target Start/End: Original strand, 45945587 - 45945646
Alignment:
| Q |
409 |
tacagaaaaagggaggccacaagcatatggagtgatattcaaagatacattgggaatcat |
468 |
Q |
| |
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| T |
45945587 |
tacagaaaaagggaggccacaagcttatggagtgattttcaaagatacattaggaatcat |
45945646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 23 - 115
Target Start/End: Original strand, 3083490 - 3083582
Alignment:
| Q |
23 |
ccttacaatggttttgcttttgatcacttgtatgggactaaggttggagggacaatttttgataaggaaggttatagacacactgcagctgat |
115 |
Q |
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||||||||||| ||| ||| ||||||| | ||||||||||||||||||| ||||| ||||| | | ||| ||||||||||||| |||||| |
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| T |
3083490 |
ccttacaatggctttacttatgatcacattcatgggactaaggttggaggtacaatctttgaccataatggtcatagacacactgctgctgat |
3083582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 23 - 115
Target Start/End: Original strand, 3091930 - 3092022
Alignment:
| Q |
23 |
ccttacaatggttttgcttttgatcacttgtatgggactaaggttggagggacaatttttgataaggaaggttatagacacactgcagctgat |
115 |
Q |
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| T |
3091930 |
ccttacaatggctttacttatgatcatattcatgggactaaggttggaggtacaatctttgaccataatggtcatagacacactgcagctgat |
3092022 |
T |
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