View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3363_low_8 (Length: 420)
Name: NF3363_low_8
Description: NF3363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3363_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 14 - 406
Target Start/End: Original strand, 35696845 - 35697237
Alignment:
| Q |
14 |
atatgatgacgcttcaacgatcacaaagcgnnnnnnntgattcgacgattaatgattatgtttataatcctaatggaaaaaacggttacggtggtgaatg |
113 |
Q |
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| T |
35696845 |
atatgatgacgcttcaacgatcacaaagcgaaaaaaatgattcgacgattaatgattatgtttataatcctaatggaaaaaacggttacggtggtgaatg |
35696944 |
T |
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| Q |
114 |
tgagtctgaaattagtgttcctactgggaagaaaggtgtgatcgtgaacgcgaatggatcgttgtgttcggatgttggaccttcaccgtctgtggtggct |
213 |
Q |
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| T |
35696945 |
tgagtctgaaattagtgttcctactgggaagaaaggtgtgatcgtgaacgcgaatggatcgttgtgttcggatgttggaccttcaccgtctgtggtggct |
35697044 |
T |
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| Q |
214 |
gccgcgatagcgaaaggattgtatccgttgccattgcacgtgccaagaaagacggtgaataattcaatgtttgagaaatggccgccggagaaggacaatg |
313 |
Q |
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| T |
35697045 |
gccgcgatagcgaaaggattgtatccgttgccattgcacgtgccaagaaagacggtgaataattcaatgtttgagaaatggccgccggagaaggacaatg |
35697144 |
T |
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| Q |
314 |
gcggggagatgttgaacacgaagatggaccggtggagacagatagatataccgcaggtttatgatcatttggggaataataataatgatagtg |
406 |
Q |
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| T |
35697145 |
gcggggagatgttgaacacgaagatggaccggtggagacagatagatataccgcaggtttatgatcatttggggaataataataatggtagtg |
35697237 |
T |
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