View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3364_high_1 (Length: 559)
Name: NF3364_high_1
Description: NF3364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3364_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 514; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 17 - 542
Target Start/End: Original strand, 55171876 - 55172401
Alignment:
| Q |
17 |
cactgtcctgtattgtttggtgtacaaaaaacattagttgttgtatgttttgtcctcactcactcatgattaatgtttggttggatcatgaagagtctta |
116 |
Q |
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| T |
55171876 |
cactgtcctgtattgtttggtgtacaaaaaacattagttgttgtatgttttgtcctcactcactcatgattaatgtttggttggatcatgaagagtctta |
55171975 |
T |
|
| Q |
117 |
caggtagtccaacagtggtagccaagatggaaatgtagttggttccaaccttgaagttagctggttgctcaaattcaaaagatttttcttcatgggtacc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55171976 |
caggtagtccaacagtggtagccaagatggaaatgtagttggttccaaccttgaagttagctggttgctcaaattcaaaagatttttcttcatgggtacc |
55172075 |
T |
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| Q |
217 |
atgatcagtacctattacaaatcaaagttagaatcatataaaactcttgccatttcctctcctctcactcaccattgccgtttattattgaaattatgtt |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |
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| T |
55172076 |
atgatcagtacctattacaaatcaaagttagaatcatataaaactcttgccatttcctctcctatcactcaccattgtcgtttattattgaaattatgtt |
55172175 |
T |
|
| Q |
317 |
cttaccaatgtattgtccattaacaaatgcggatagtgtgtgtccaagactcataatacgaagaattgcactcttctttggcaagtcttctggacccaac |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55172176 |
cttaccaatgtattgtccattaacaaatgcggatagtgtgtgtccaagactcataatacgaagaattgcactcttctttggcaagtcttctggacccaac |
55172275 |
T |
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| Q |
417 |
tcaaagctgcattagaaaaaccataattaatttatgatagatgtggggaatgagttgcatatttcaaatttaattaaggttgaatgaatgaatcctcacc |
516 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55172276 |
tcaaagctgcattagaaaaaccataaataatttatgatagatgtggggaatgagttgcatatttcaaatttaattaaggttgaatgaatgaatcctcacc |
55172375 |
T |
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| Q |
517 |
tggtggtgtaccatccataatctgtg |
542 |
Q |
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| T |
55172376 |
tggtggtgtaccatccataatctgtg |
55172401 |
T |
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